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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTACAACATGTCCAAACAGGAAGAGCTGGGGTTCTTTTAAAACAAATTTGGAAGTGGTGTGGCATTGCCCTCAAAAGTTCTGCACTTTTGTCAATATGGgtaggccattgattttctttggtctgttactaatcttttgatttttttttctttatttcattataactgctgaaataatgttcag

Basic information

species Vitis vinifera
transcript Vv07s0031g00230.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27583741|gb|CB006436.1|CB006436
EST:     GGAAGTGGTGTGGCATTGCCCTCAAAAGTTCTGCACTTTTGTCAATATGG                         ATCTTTGTCATCCCGGTATTGATCGGTCTGCTGTTTGAGCTTGTGGTGGTT
genomic: GGAAGTGGTGTGGCATTGCCCTCAAAAGTTCTGCACTTTTGTCAATATGGgtaggccatt ... taatgttcagATCTTTGTCATCCCGGTATTGATCGGTCTGCTGTTTGAGCTTGTGGTGGTT
EST: gi|110356919|gb|EC920092.1|EC920092
EST:     GGAAGTGGTGTGGCATTGCCCTCAAAAGTTCTGCACTTTTGTCAATATGG                         ATCTTTGTCATCCCGGTATTGATCGGTCTGCTGTTTGAGCTTGTGGTGGTT
genomic: GGAAGTGGTGTGGCATTGCCCTCAAAAGTTCTGCACTTTTGTCAATATGGgtaggccatt ... taatgttcagATCTTTGTCATCCCGGTATTGATCGGTCTGCTGTTTGAGCTTGTGGTGGTT
EST: gi|110725160|gb|EE101552.1|EE101552
EST:     GGAAGTGGTGTGGCATTGCCCTCAAAAGTTCTGCACTTTTGTCAATATGG                         ATCTTTGTCATCCCGGTATTGATCGGTCTGCTGTTTGAGCTTGTGGTGGTT
genomic: GGAAGTGGTGTGGCATTGCCCTCAAAAGTTCTGCACTTTTGTCAATATGGgtaggccatt ... taatgttcagATCTTTGTCATCCCGGTATTGATCGGTCTGCTGTTTGAGCTTGTGGTGGTT
EST: gi|110357312|gb|EC920764.1|EC920764
EST:     GGAAGTGGTGTGGCATTGCCCTCAAAAGTTCTGCACTTTTGTCAATATGG                         ATCTTTGTCATCCCGGTATTGATCGGTCTGCTGTTTGAGCTTGTGGTGGTT
genomic: GGAAGTGGTGTGGCATTGCCCTCAAAAGTTCTGCACTTTTGTCAATATGGgtaggccatt ... taatgttcagATCTTTGTCATCCCGGTATTGATCGGTCTGCTGTTTGAGCTTGTGGTGGTT
EST: gi|71863118|gb|DT012173.1|DT012173
EST:     GGAAGTGGTGTGGCATTGCCCTCAAAAGTTCTGCACTTTTGTCAATATGG                         ATCTTTGTCATCCCGGTATTGATCGGTCTGCTGTTTGAGCTTGTGGTGGTT
genomic: GGAAGTGGTGTGGCATTGCCCTCAAAAGTTCTGCACTTTTGTCAATATGGgtaggccatt ... taatgttcagATCTTTGTCATCCCGGTATTGATCGGTCTGCTGTTTGAGCTTGTGGTGGTT
EST: gi|110719714|gb|EE095083.1|EE095083
EST:     GGAAGTGGTGTGGCATTGCCCTCAAAAGTTCTGCACTTTTGTCAATATGG                         ATCTTTGTCATCCCGGTATTGATCGGTCTGCTGTTTGAGCTTGTGGTGGTT
genomic: GGAAGTGGTGTGGCATTGCCCTCAAAAGTTCTGCACTTTTGTCAATATGGgtaggccatt ... taatgttcagATCTTTGTCATCCCGGTATTGATCGGTCTGCTGTTTGAGCTTGTGGTGGTT