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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATTATCTGTTGGTGCATTACCTTTGGAGTATCACAGAAAATCTCACTGGGATTTTGTCCTTGAGGAAATGGCATGGTTGGCAAATGATTTTGCGCAGgtctgattacacatgatcatcttcccctaacacaaacacacacacagatgtattctaccttttattctttgtttttcctcttcttttttatctaaaagaaaaatactgtaactggaatttccaacttcatgtctttcaaacttaccctttctttttctcattcacatatag

Basic information

species Vitis vinifera
transcript Vv07s0005g06680.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G018142_T01 (Zea mays), 5'ss of exon 4
TGAATTATCTGTTGGTGCATTACCTTTGGAGTATCACAGAAAATCTCACTGGGATTTTGTCCTTGAGGAAATGGCATGGTTGGCAAATGATTTTGCGCAGgtctgattacacatgatcatcttcccctaacacaaacacacacacagatgtattctaccttttattctttgtttttcctcttcttttttatctaaaagaaaaatactgtaactggaatttccaacttcatgtctttcaaacttaccctttctttttctcattcacatatag
| ||  ||||    ||    |  |||| ||| |    |||||   |||||||||||||||||||||||| ||| | ||| |||| ||||||||   ||||||  | || ||     | |||| |             | |       || | || |  |    |  | |||  | || |       | |||  | ||||||||    ||||       || |||                                               
TCAACGATCTCCCTGTAACATTGCTTTAGAGAAGAGGAGAAAGAGTCACTGGGATTTTGTCCTTGAGGAGATGACTTGGATGGCTAATGATTTCATGCAGgtacgtttgca---agttatctcc-------------atatttcttcattttttttctcgaacacgcattgcgtatcat-------tatattaagaagaaaaaaggggtaag-aacccttacaa-----------------------------------------------

upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G46710.1 (Glycine max), 5'ss of exon 8
TGAATTATCTGTTGGTGCATTACCTTTGGAGTATCACAGAAAATCTCACTGGGATTTTGTCCTTGAGGAAATGGCATGGTTGGCAAATGATTTTGCGCAGgtctgat----tacacatgatcatcttcccctaacacaaacacacacacagatgtattctaccttttattctttgtttttcctcttcttttttatctaaaagaaaaatactgtaactggaatttccaacttcatgtctttcaaacttaccctttctttttctcattcacatatag
 || ||||||||| |  |||| || |   ||   || ||||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||| | ||    || || |  |  |  | | ||     |    ||     |  || |  ||| |  || ||   | |  ||  | ||  | ||||| ||     || | |   |   ||    | ||| |   |||| |||  |                                
AGAGTTATCTGTTCGCACATTGCCCTCACAGATCCATAGAAAGTCTCACTGGGGTTTTGTCCTTGAGGAAATGACATGGTTGGCGAATGATTTTGCACAGgtattattttttagacctacttttgattctctgctctatcatcatttggacttgaagactaacccttgttaaatttaattgatatt--tatttatttattttcaatacatcttttttg----tcccaccaaaatgtgtttgtag-------------------------------

upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G36660.1 (Glycine max), 5'ss of exon 6
TGAATTATCTGTTGGTGCATTACCTTTGGAGTATCACAGAAAATCTCACTGGGATTTTGTCCTTGAGGAAATGGCATGGTTGGCAAATGATTTTGCGCAGgtctgatt----acacatgatcatcttcccctaacacaaacacacacacagatgtattctaccttttattctttgtttttcctcttcttttttatctaaaagaaaaatactgtaactggaatttccaacttcatgtctttcaaacttaccctttctttttctcattcacatatag
 || ||||||||| |  ||||  | |   ||   || ||||| |||| ||||| ||||||||| ||||||||| |||||||||||||||||||||| ||||| | |||    | || || |  |  | | ||     |    ||  |  ||   |     ||      || ||   |||   |  | |||  | | ||| | |    | || |         | ||| |   |||| |||  |                                
AGAGTTATCTGTTCGCACATTGTCCTCACAGATCCATAGAAAGTCTCGCTGGGGTTTTGTCCTCGAGGAAATGACATGGTTGGCAAATGATTTTGCACAGgttttattttctagacctgcttgtgattctctgctctatcatcattctaaggacttgaagactaacccttgttaaatttaattgatatttgatttttaataca----tccttttg-------tcccaccaaaatgtgtttgtag-------------------------------

upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G14060.1 (Glycine max), 5'ss of exon 8
TGAATTATCTGTTGGTGCATTACCTTTGGAGTATCACAGAAAATCTCACTGGGATTTTGTCCTTGAGGAAATGGCATGGTTGGCAAATGATTTTGCGCAGgtctgattacacatgatcatcttcccctaacacaaacacacacacagatgtattctaccttttattctttgtttttcctcttcttttttat-ctaaaagaaaaatactgtaactggaatttccaacttcatgtctttcaaacttaccctttctttttctc---attcacatatag
 ||||||||| ||    | ||| |     || | |||||||| || ||||||| |||||| || ||||||||||||||| | |||||||||||||| ||||| | |||    ||  |||    |   | |                  |||| ||   | |   |||| ||    || | | | |||  |  |||  | || |||| |    ||  |||||  |  |   | |  || |||  |  | |||  |         || ||  | |||
AGAATTATCTCTTCACTCCTTATCCACACAGAACCACAGAAAGTCACACTGGGGTTTTGTTCTAGAGGAAATGGCATGGCTAGCAAATGATTTTGCTCAGgtttaattttttatactca----ctagtgatgt---------------tgtactccctcatactttctgtggcaatcttttccatttagaaactagcaaaataataatcattcttaaatttatatatgattattcttgaaatgtttctttttctccaaaaaaaatgcatttgtag

upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G24870.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAATTATCTGTTGGTGCATTACCTTTGGAGTATCACAGAAAATCTCACTGGGATTTTGTCCTTGAGGAAATGGCATGGTTGGCAAATGATTTTGCGCAGgtctgattacacatgatcatcttcccctaacacaaacacacacacagatgtattctaccttttattctttgtttttcctcttcttttttatctaaaagaaaaatactgtaactggaatttccaacttcatgtctttcaaacttaccctttctttttctcattcacatatag
 |||||||||  |||| |   |||  |||||   |     |||||||| |||||||||||||| || |||||||||||| ||||||||||||||||||||||||| |        || ||||| |  ||||| |||  |  | | |  || ||   |  |  |    |||||   |  |  |  | ||||| ||  |                                                                          
CGAATTATCTTGTGGTACTGCACCAGTGGAGGTCCGTGAGAAATCTCAATGGGATTTTGTCCTCGAAGAAATGGCATGGCTGGCAAATGATTTTGCGCAGgtctggtctagttaaattatctttc--taacataaattc-tatatatctgcatggaaaatgctgcattttgtggatttttgttctgtttatttactacggcgt--------------------------------------------------------------------