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TATTCAAGTTTCTTGCTTAGGGGCATCTCCATCATCTCCATCTAGGATGTTAATGGCTAAAGCTGCTGCAGAGGAAGCTGTTTTGAGAGAATTACCTGAGgtgaaactattatttttgctcgagtctgatctgattgatgtggctacttccaatggatcttccccaccccccccccccnnnnnnnnnnnnnnnnnnnnnn...
species | Vitis vinifera |
transcript | Vv07s0005g04440.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TAATGGCTAAAGCTGCTGCAGAGGAAGCTGTTTTGAGAGAATTACCTGAG GCCACAATTATGAGACCGGCTGTAATGATTGGTACAGAGGATCGGATTCTGEST: gi|161720302|gb|FC071155.1|FC071155
genomic: TAATGGCTAAAGCTGCTGCAGAGGAAGCTGTTTTGAGAGAATTACCTGAGgtgaaactat ... ccactttcagGCCACAATTATGAGACCGGCTGTAATGATTGGTACAGAGGATCGGATTCTG
EST: TAATGGCTAAAGCTGCTGCAGAGGAAGCTGTTTTGAGAGAATTACCTGAG GCCACAATTATGAGACCGGCTGTAATGATTGGTACAGAGGATCGGATTCTGEST: gi|161719288|gb|FC068264.1|FC068264
genomic: TAATGGCTAAAGCTGCTGCAGAGGAAGCTGTTTTGAGAGAATTACCTGAGgtgaaactat ... ccactttcagGCCACAATTATGAGACCGGCTGTAATGATTGGTACAGAGGATCGGATTCTG
EST: TAATGGCTAAAGCTGCTGCAGAGGAAGCTGTTTTGAGAGAATTAC-TGAG GCCACAAT-ATGAGAC-GGCTGTA-TGATTG-TACAG-GGATCGGAT-CTGEST: gi|161708607|gb|FC060440.1|FC060440
genomic: TAATGGCTAAAGCTGCTGCAGAGGAAGCTGTTTTGAGAGAATTACCTGAGgtgaaactat ... ccactttcagGCCACAATTATGAGACCGGCTGTAATGATTGGTACAGAGGATCGGATTCTG
EST: TAATGGCTAAAGCTGCTGCAGAGGAAGCTGTTTTGAGAGAATTACCTGAG GCCACAATTATGAGACCGGCTGTAATGATTGGTACAGAGGATCGGATTCTGEST: gi|110424142|gb|EC990498.1|EC990498
genomic: TAATGGCTAAAGCTGCTGCAGAGGAAGCTGTTTTGAGAGAATTACCTGAGgtgaaactat ... ccactttcagGCCACAATTATGAGACCGGCTGTAATGATTGGTACAGAGGATCGGATTCTG
EST: TAATGGCTAAAGCTGCTGCAGAGGAAGCTGTTTTGAGAGAATTACCTGAG GCCACAATTATGAGACCGGCTGTAATGATTGGTACAGAGGATCGGATTCTGEST: gi|161718481|gb|FC066331.1|FC066331
genomic: TAATGGCTAAAGCTGCTGCAGAGGAAGCTGTTTTGAGAGAATTACCTGAGgtgaaactat ... ccactttcagGCCACAATTATGAGACCGGCTGTAATGATTGGTACAGAGGATCGGATTCTG
EST: TAATGGCTAAAGCTGCTGCAGAGGAAGCTGTTTTGAGAGAATTACCTGAG GCCACAATTATGAGACCGGCTGTAATGATTGGTACAGAGGATC
genomic: TAATGGCTAAAGCTGCTGCAGAGGAAGCTGTTTTGAGAGAATTACCTGAGgtgaaactat ... ccactttcagGCCACAATTATGAGACCGGCTGTAATGATTGGTACAGAGGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTCAAGTTTCTTGCTTAGGGGCATCTCCATCATCTCCATCTAGGATGTTAATGGCTAAAGCTGCTGCAGAGGAAGCTGTTTTGAGAGAATTACCTGAGgtgaaactattatttttgctcgagtctgatctgattgatgtggctacttccaatggatcttccccaccccccccccccnnnnnnnnnnnnnnnnnnnnnn
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc