Sequence
atgc intronic sequence ATGC exonic sequenceTAACTTCTTATATGATGATGCCACAAGAACAATAAATCTCATAGACTTTGGAGCTGCTCGAGATTACCCTAAAAGATTTGTTGATGACTATTTAAGAATGgtaacttctttttgcttcatattttagtttctttttggcactttgtcaactatcattttctattatttctgtggcatacatccaaatgaaggttgcagat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g02430.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G27970.1 (Glycine max), 5'ss of exon 9
TAACTTCTTATATGATGATGCCACAAGAACAATAAATCTCATAGACTTTGGAGCTGCTCGAGATTACCCTAAAAGATTTGTTGATGACTATTTAAGAATGgtaacttctttttgcttcatattttagtttctttttggcactttgtcaactatcattttctattat--ttctgtggcatacatccaaatgaaggttgcagat
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TAATTTCTTATTTGATGAAGCTACAAAGACAATCAATCTGATTGATTTTGGAGCAGCACGTGATTACCCTAAAACATTTGTTGATGATTATTTAAGAATGgttggttctcttcctttcaaattt--atctctttatatcaataactatgctgaggtttgaaatcttcattttttattgtttcacctgtttaatttttatgtt
upper sequence: Vv07s0005g02430.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G00920.1 (Glycine max), 5'ss of exon 8
TAACTTCTTATATGATGATGCCACAAGAACAATAAATCTCATAGACTTTGGAGCTGCTCGAGATTACCCTAAAAGATTTGTTGATGACTATTTAAGAATGgtaacttctttttgcttcatattttagtttctttttggcactttgtcaactatcattttctattatt-tctgtggcatacatccaaatgaaggttgcagat-
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TAATTTCTTATTTGATGAAGTTACAAAGACAATCAATCTGATTGATTTTGGAGCAGCACGGGATTACCCTAAAAGATTTGTTGATGATTATTTAAGAATGgttggttctcttcctttctaattt--atctctttatatcaataactaagctgaggtttgaaatcttaatttataacatcgtgtcagttcttgactgcttcca
upper sequence: Vv07s0005g02430.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G01660.1 (Arabidopsis thaliana), 5'ss of exon 6
TAACTTCTTATATGATGATGCCACAAGAACAATAAATCTCATAGACTTTGGAGCTGCTCGAGATTACCCTAAAAGATTTGTTGATGACTATTTAAGAATGgtaacttctttttgcttcatattttagtttctttttggcactttgtc-aactatcattttctattatttctgtggcatacatccaaatgaaggttgcagat
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TAACTTCTTATACAATGAAGCCACAAAGACAATAAATCTTATCGATTTCGGAGCAGCTCGTGATTACCCCAAGAAATTCGTCGATGACTATCTACGAATGgtaaaacaatcttaccg-attcctctttttcgctttcacatagtaaagaattctgaaaattgaacattt-tatggaattctttttcag-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689212|gb|EC935254.1|EC935254EST: TTACCCTAAAAGATTTGTTGATGACTATTTAAGAATG GTTTATGCATGCGCAAATGGAGACAGAGATGCAGTAATTGAGATGTCACAG
genomic: TTACCCTAAAAGATTTGTTGATGACTATTTAAGAATGgtaacttctt ... ttttgagcagGTTTATGCATGCGCAAATGGAGACAGAGATGCAGTAATTGAGATGTCACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAACTTCTTATATGATGATGCCACAAGAACAATAAATCTCATAGACTTTGGAGCTGCTCGAGATTACCCTAAAAGATTTGTTGATGACTATTTAAGAATGgtaacttctttttgcttcatattttagtttctttttggcactttgtcaactatcattttctattatttctgtggcatacatccaaatgaaggttgcagat
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaa