Sequence
atgc intronic sequence ATGC exonic sequenceCCTGAAGATTGGGATGATGAGGAAGATGGTGAATGGACACCTCCAACAATAGCTAACCCTGAGTACAAGGGACCATGGAAGCCCAAGgttcgctgaaatgtttattagttaagatgatgttatggaattttggaagttgacggttcacttaattgttcttgaaccattggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g61670.1 (Oryza sativa), 5'ss of exon 7
CCTGAAGATTGGGATGATGAGGAAGATGGTGAATGGACACCTCCAACAATAGCTAACCCTGAGTACAAGGGACCATGGAAGCCCAAGgttcg-------ctgaaatgtttattagttaagatgatgttatggaattttggaagttgacggttcacttaattgttcttgaaccattggcag-----
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CCTGAGGACTGGGATGATGAGGAAGATGGAGAATGGACAGCTCCAACCATTCCAAACCCTGAGTACAAGGGACCATGGAACCAAAAGgtatgagtgtgactgaatagttcatttactctagacaagctagg---ttcagcatcacgattactcact-aattg--catgaaattttgtgtgtttag
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os07g14270.3 (Oryza sativa), 5'ss of exon 7
CCTGAAGATTGGGATGATGAGGAAGATGGTGAATGGACACCTCCAACAATAGCTAACCCTGAGTACAAGGGACCATGGAAGCCCAAGgttcgctgaaatgtttattagttaagatgatgttatggaattttggaagttgacggttc--acttaattgttcttgaaccattggcag
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CCTGAGGACTGGGATGATGAGGAAGATGGTGAGTGGACTGCACCAACCATTCCTAACCCTGAGTACAAGGGACCATGGAAGCAAAAGgtgtgaatatctgtttactgatgcagatgcacttgaaacacttgcatatttctggtttctgacataaacatgttt---ctttttccag
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 7
CCTGAAGATTGGGATGATGAGGAAGATGGTGAATGGACACCTCCAACAATAGCTAACCCTGAGTACAAGGGACCATGGAAGCCCAAGgttcgctgaaatgtttattagttaagatgatgttatggaattttggaagttgacggttcacttaattgttcttgaaccattggcag
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CCTGAGGACTGGGACGATGAGGAAGATGGTGAATGGACTGCCCCTACCATTCCCAACCCAGAATACAAGGGACCATGGAAACAAAAGgtatg--gcagttccttttaacctataaactg--acagcaattcatattctgatatctgacagcat-gttgtttcac--ttgccag
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G074687_T01 (Zea mays), 5'ss of exon 7
CCTGAAGATTGGGATGATGAGGAAGATGGTGAATGGACACCTCCAACAATAGCTAACCCTGAGTACAAGGGACCATGGAAGCCCAAGgt--------tcgctgaaatgtttattagttaagatgatgttatggaattttggaagttgacggttcacttaattgttcttgaaccattggcag
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CCTGAGGACTGGGATGACGAGGAAGATGGTGAATGGACTGCCCCTACCATTCCCAACCCAGAATACAAAGGACCATGGAAACAAAAGgtatggcagttccttgaactgtatacaaactgacatcaattcat---attctgatatctgacagcatgtttcact-tgccag------------
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G28890.1 (Glycine max), 5'ss of exon 7
CCTGAAGATTGGGATGATGAGGAAGATGGTGAATGGACACCTCCAACAATAGCTAACCCTGAGTACAAGGGACCATGGAAGCCCAAGgttcgctgaaatgtttatt----agttaagatgat---gttatggaattttggaagttgacggttcacttaattgttcttgaaccattggcag-------------
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CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGgtttgtggaaatttttattgtaaatttgtaatatttgaaatacgacatattccattatgtttggtaatgaatttgctttctaactttgcatgctacatatttgcag
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 7
CCTGAAGATTGGGATGATGAGGAAGATGGTGAATGGACACCTCCAACAATAGCTAACCCTGAGTACAAGGGACCATGGAAGCCCAAGgttcgctgaaatgtttattagttaagatgatgt-tatggaattttggaagttg----acggttcacttaattgttcttgaaccattggcag---------------
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CCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGATTACAAGGGCCCATGGAAGGCAAAGgtttgtggaaatttgtttt-gtaaatttgtaatatatgaaatatgacatattccattatgtttggaatgaatttgctttataactttgcatgctacatatttgcag
upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G09210.1 (Arabidopsis thaliana), 5'ss of exon 6
CCTGAAGATTGGGATGATGAGGAAGATGGTGAATGGACACCTCCAACAATAGCTAACCCTGAGTACAAGGGACCATGGAAGCCCAAGgttcgctgaaatgtttattagttaagatgatgttatggaattttggaagttgacggttcacttaattgttcttgaaccattggcag
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CCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCAACAATCCCCAACCCTGAGTACATGGGTGAATGGAAGCCTAAGgtttgtc--aatttctatt--ccaaaaagtatctatatcctggtcaacgtttttcttcctctcaaggctgtcaaatatttttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110703029|gb|EE079515.1|EE079515EST: CACCTCCAACAATAGCTAACCCTGAGTACAAGGGACCATGGAAGCCCAAG CAAATAAAAAACCCCAACTACAAGGGAAAATGGAAGGCACCTATGATTGAC
genomic: CACCTCCAACAATAGCTAACCCTGAGTACAAGGGACCATGGAAGCCCAAGgttcgctgaa ... ccattggcagCAAATAAAAAACCCCAACTACAAGGGAAAATGGAAGGCACCTATGATTGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTGAAGATTGGGATGATGAGGAAGATGGTGAATGGACACCTCCAACAATAGCTAACCCTGAGTACAAGGGACCATGGAAGCCCAAGgttcgctgaaatgtttattagttaagatgatgttatggaattttggaagttgacggttcacttaattgttcttgaaccattggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG