Sequence
atgc intronic sequence ATGC exonic sequenceTCACCCATCTCCCTCAGTCCTCATTCCTGCCCTTCGCACAGTTGGAAATATTGTTACTGGGGATGATATCCAAACTCAGgtactatacactttcattgttctacaaatttatttccttttcaattttattcttgggattttcttatttttgggtcgtagttgaaccacaatctggtggt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S43_141V6.1 (Physcomitrella patens), 5'ss of exon 8
TCACCCATCTCCCTCAGTCCTCATTCCTGCCCTTCGCACAGTTGGAAATATTGTTACTGGGGATGATATCCAAACTCAGgtactatacactttcattg---ttctacaaatttatttccttttcaattttattcttgggattttcttatttttgggtcgtagttgaaccacaatctggtggt-----
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CCATCCATCACCCTCTGTTCTCATTCCTGCACTGCGCACTGTCGGCAATATTGTTACTGGTGACGATCTCCAGACGCAGgta-tgcatgctttgatttgacttctacgggattatttcggttt-----ttagtacgaagatcatatcctttcagga--gtgggctgacagcaccctcccagtaagaa
upper sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S165_51V6.1 (Physcomitrella patens), 5'ss of exon 7
TCACCCATCTCCCTCAGTCCTCATTCCTGCCCTTCGCACAGTTGGAAATATTGTTACTGGGGATGATATCCAAACTCAGgta-ctatacactttcattgttc--tacaaatttatttccttttcaattttattcttgggattttcttatttttgggtcgtagttg--aaccacaatctggtggt-----------------------------------------------
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CCACCCTTCACCCTCAGTGCTCATCCCTGCCTTGCGAACAGTCGGAAATATTGTTACTGGCGACGATCTTCAAACACAGgtatccatacaagatctgaaatcattgcttcgctgtttcttttcaacatttctgcatcaaagttgttcatgtgtatgttacggtcgtcacccattatttcactttccatcccgtcatcagtagtgtttacgtgcgtgtttactgtcgcgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110397066|gb|EC962784.1|EC962784EST: CCCTTCGCACAGTTGGAAATATTGTTACTGGGGATGATATCCAAACTCAG TGTATTATAAACTATGGAGCTCTTCCTTGCCTTTTGAACCTGTTGTCACAT
genomic: CCCTTCGCACAGTTGGAAATATTGTTACTGGGGATGATATCCAAACTCAGgtactataca ... ctcttttcagTGTATTATAAACTATGGAGCTCTTCCTTGCCTTTTGAACCTGTTGTCACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCACCCATCTCCCTCAGTCCTCATTCCTGCCCTTCGCACAGTTGGAAATATTGTTACTGGGGATGATATCCAAACTCAGgtactatacactttcattgttctacaaatttatttccttttcaattttattcttgggattttcttatttttgggtcgtagttgaaccacaatctggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccacaa