Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAAgtaagttattcttgttacacttctaaaggttttgttgttttactgtcaagtggatttgttttggttgatactgcaagcctgaaatttgttagtgcctttgttgcag

Basic information

species Vitis vinifera
transcript Vv07s0005g00880.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 6
TCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAAgtaagttattcttgttacacttctaaaggttttgttgttttactgtcaagtggatttgttttggttgatactgcaagcctgaaatttgttagtgcctttgttgcag
 |||||||||| ||||| || ||||||||||| ||||| || || |||||||| || || |||||| | |||||||| || ||||| ||   |||||| ||| | | || || |  ||  | |    || || ||  || |||    |||  |        | || | |  | |  | |   |  | ||   |  | | | ||||
ACTATTGAGTTTAAAGACATAATTAAAATTGGACGTACACATACCCAAGATGCCACCCCATTGACTCTTGGCCAAGAATTCAGTGGCTACACTACACAGgtaggat-ttattctagcatcttttgttgtcttatttattaactacgcagttaa--------gattaacag-gtagacttattaactatttaagattctat-gcag

upper sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G02040.2 (Glycine max), 5'ss of exon 6
TCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAAgtaag-ttattcttgttacacttctaaaggttttgttgttttactgtcaagtggatttgttttggttgatactgcaagcct-------gaaatttgttagtgcctttgttgcag-------
|| ||||| |||||||||||| | || ||||| || ||||| |||||||||||||| ||||||||| | || ||||||||||||||||||  |||||||||||| ||  |  ||||   ||| |   | ||||||  |||  || |||  |||  |||  |||    || |||  ||          |   ||| | | | | |||              
TCAATTGAATTCAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGGCAAGAGTTTAGTGGGTATACTACACAAgtaagcttgcttatgtttggcttttgctg-ttttgtattttctctatcat-tggtgttgcattgtaaaatcctggcagttcatggggagtggtttatcattactttttcctttatctgcag

upper sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 6
TCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAAgtaag-ttattcttgttacacttctaaaggttttgttgttttactgtcaagtggat-ttgttttggttgatactgcaagcc-------tgaaatttgttagtgcctttgttgcag--------
|| ||||| |||||||||||| | || ||||| || ||||| |||||||||||||| ||||||||| | || ||||||||||||||||||  |||||||||||| ||  |  ||||   ||| |   | ||||||  |||| || |  | |||||  ||  |||    || |||  ||         ||  |||| | | | | ||| |             
TCAATTGAATTCAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAAgtaagcttgcttatgtttggcttgtgctg-ttttgtatttttgctat--aatggatgctgcattgtaaaatcctgacagttcgtggggtgtgatttctcattacttttttcctttatctgcag

upper sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 6
TCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAAgtaagttattcttgttacacttctaaaggttttgttgttt--tactgtcaagtggatttgttttggttgata-----ctgcaagc------ctgaaatttgttagtgcctttgttgcag-------
||  |||| || ||||||||| | || ||||| || ||||| |||||||||||||| ||||||||| | || |||||||||||||| |||  ||||||||||||   ||||| |        ||    || |||||||   || | |||     |||  | |||| || ||     |||   |        |   ||| || | | | |||    |         
TCAGTTGAATTTAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGATATACTACACAAgtaagcc-ttcttatgtttggcttatgccttatgttgttctgtattttcagtatcattgatgttggatggtaatatcctgtgggtagtgatttctcattagtcactactttttcctctatctacag

upper sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT2G47510.2 (Arabidopsis thaliana), 5'ss of exon 7
TCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAAgtaagttattcttgttacacttctaaaggttttgttgttttactgtcaagtggatttgttttggttgatactgcaagcctgaaatttgttagtgcctttgttgcag
||  | ||||||||||||||| | ||||||||  | ||||||||||||||||| || ||||||||  | || ||||| ||| |||| |||  ||| |||||||||  || |        |||  ||   | ||||       |||| |    | |||       | | | | |||  ||| || |     |              
TCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGATGCTACACCTTTGACACTAGGACAAGAATTTGGTGGCTATGCTACTCAAgtaagtggttttg-------ttcagaaaactgtgtt-------tgtctaacaaagttga---aaatcaca-tacaa-tctggaactcacctgcag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352794271|gb|FQ479513.1|FQ479513
EST:     ATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAA                         GTGAAATATGGAATTGACCGTGTCACATGCACTCTACCCCGCATGTATCAG
genomic: ATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAAgtaagttatt ... tttgttgcagGTGAAATATGGAATTGACCGTGTCACATGCACTCTACCCCGCATGTATCAG
EST: gi|110713618|gb|EE089697.1|EE089697
EST:     ATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAG                         GTGGAATATGGAA
genomic: ATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAAgtaagttatt ... tttgttgcagGTGAAATATGGAA
EST: gi|351045827|gb|FQ441012.1|FQ441012
EST:     ATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAA                         GTGAAATATGGAATTGACCGTGTCACATGCACTCTACCCCGCATGTATCAG
genomic: ATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAAgtaagttatt ... tttgttgcagGTGAAATATGGAATTGACCGTGTCACATGCACTCTACCCCGCATGTATCAG