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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAACCTATGCAAAGTACTTAACTTCAGCCCACAAAGTTGTGAACTGCGGTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcacatcaacaacatgtcccacagaactgaagtgatcacatgtcacacccctctcacacagtcgcactgtacttccccataactgattccattaaatttacattccccctttctaatttctcttaatgtgggacttgtag

Basic information

species Vitis vinifera
transcript Vv07s0005g00740.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77586578|gb|DV222413.1|DV222413
EST:     GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|45771416|gb|CN007268.1|CN007268
EST:     CAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: CAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|110418921|gb|EC985104.1|EC985104
EST:     GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|83275181|gb|DV939277.1|DV939277
EST:     G-GGAACTA-TATCACCCCAAAGAGGCTTCGAGTCA-TGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|156739183|gb|EV243304.1|EV243304
EST:     GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|71875462|gb|DT024517.1|DT024517
EST:     GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|110386518|gb|EC951118.1|EC951118
EST:     GCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|34320163|gb|CF372917.1|CF372917
EST:     GTGAAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTNGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|110687298|gb|EE064584.1|EE064584
EST:     GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|71874084|gb|DT023139.1|DT023139
EST:     GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|352785787|gb|FQ475790.1|FQ475790
EST:     GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACTTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|83274961|gb|DV939057.1|DV939057
EST:     GT-GAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|110701944|gb|EE080092.1|EE080092
EST:     GAGGAACTATTATCACCCCAAAGATGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTAACCTATGCAAAGTACTTAACTTCAGCCCACAAAGTTGTGAACTGCGGTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcacatcaacaacatgtcccacagaactgaagtgatcacatgtcacacccctctcacacagtcgcactgtacttccccataactgattccattaaatttacattccccctttctaatttctcttaatgtgggacttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA