Sequence
atgc intronic sequence ATGC exonic sequenceATAAGAAACAATAAGTTGATATACCAAGACAAGCCGAGGCTGAAGACAGCGCTGGAAATGCTCAGAACCAGCATGAGCCTCGAGGACTCATTACATGAGgtcattgcctttcttcttctttggtgtcaacacatacataagataatcaggacagcattacaggaaacaaaagatcctcattgattttggatttccccttatctccccagtgttgattgaggtggtttttggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g00510.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g21310.1 (Oryza sativa), 5'ss of exon 3
ATAAGAAACAATAAGTTGATATACCAAGACAAGCCGAGGCTGAAGACAGCGCTGGAAATGCTCAGAACCAGCATGAGCCTCGAGGACTCATTACATGAGgtcattgcctttcttcttctt-tggtgtcaacacatacataagataatcaggacagcattacaggaaacaaaagatcctcattgattttggatttcccctt-----atctccccagtgttgattgaggtggtttttggcag--------------------
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ATCAGGAAGAACAAGCTGATATACCAGGACAAGCCGAGGCTCAAGACCGCACTTGAGATGCTCAGGACCAGCATGTACGTAGAGGACAGCTTGTCCAAGgtatgtacccctcgtcttcaaatcaactcaatatatgcaccaattagttctcacatctttaggatggcactaagatcac--ttgagtatgatcttggccatgtaagatgacagtaagattatttgaatttgatcctgacaatgtaatgttttttttggcag
upper sequence: Vv07s0005g00510.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os05g29974.1 (Oryza sativa), 5'ss of exon 7
ATAAGAAACAATAAGTTGATATACCAAGACAAGCCGAGGCTGAAGACAGCGCTGGAAATGCTCAGAACCAGCATGAGCCTCGAG---GACTCATTACA--TGAGgtcattgcctttcttcttc-tttggtg---tcaacacatacataagataatcaggacagcattacaggaaacaaa-----agatcctcattgattttggatttccccttatctccccagtgttgattgaggtggtttttggcag
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ATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGCTTGTCACAGgtgaaaaaaaaccctgactgatccatctgacaagattatcatctgccatgaattgatgcatcagctctgtcgagtgccagtgactgaactctgaacatatgtagagtgtgagtt-tctgaacattgtggtttttcgtggtgggtggcag
upper sequence: Vv07s0005g00510.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G02160.1 (Glycine max), 5'ss of exon 7
ATAAGAAACAATAAGTTGATATACCAAGACAAGCCGAGGCTGAAGACAGCGCTGGAAATGCTCAGAACCAGCATGAGCCTCGAGGACTCATTACATGAGgtcattgcctttcttcttctttggtgtcaacacatacataagataatcaggacagcattacaggaaacaaaagatcctcattgattttggatttccccttatctccccagtgttgattgaggtggtttttggcag
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ATAAGAAATAACAAATTGATATACCAAGACAAGCCCAGGCTAAAAACAGCAATGGAAATGATGAGAACTAGCATGAGTCTTGAAGAGAGTCTACATGAGgtgatt-catagattttttttt--tcttaaaaaaaacatatt----tgaagtcagt-ttatat-atgccaccctttattttggattaaaaatcaaattacgccatttctagactcattctataaacttttagcag
upper sequence: Vv07s0005g00510.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G37290.1 (Glycine max), 5'ss of exon 6
ATAAGAAACAATAAGTTGATATACCAAGACAAGCCGAGGCTGAAGACAGCGCTGGAAATGCTCAGAACCAGCATGAGCCTCGAGGACTCATTACATGAGgtcattgcctttcttcttctttggtgtcaacacatacataagataatcaggacagcattacaggaaacaaaagatcctcattgattttggatttccccttatctccccagtgttgattgaggtggtttttggcag
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ATAAGGAAAAACAAGTTGATATACCAGGACAAGCCAAGGCTAAAAACAGCATTAGAAATGTTGAGAATCAGCATGAGCCTTGAAGACAGCTTATATAAGgttataaactcgtttgatttt------------atattggatctagtt-------cacaataaaaaattaccacttcttatatatactt-attatacctgattttgtttg-gttcattgactgagttttgagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110423997|gb|EC990350.1|EC990350EST: CGCTGGAAATGCTCAGAACCAGCATGAGCCTCGAGGACTCATTACATGAG GTGACATTGCCATTCTTTGTGCTGCACGGCGAGGCAGATACAGTGACCGAC
genomic: CGCTGGAAATGCTCAGAACCAGCATGAGCCTCGAGGACTCATTACATGAGgtcattgcct ... tttttggcagGTTACATTGCCATTCTTTGTGCTGCACGGCGAGGCAGATACAGTGACTGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAAGAAACAATAAGTTGATATACCAAGACAAGCCGAGGCTGAAGACAGCGCTGGAAATGCTCAGAACCAGCATGAGCCTCGAGGACTCATTACATGAGgtcattgcctttcttcttctttggtgtcaacacatacataagataatcaggacagcattacaggaaacaaaagatcctcattgattttggatttccccttatctccccagtgttgattgaggtggtttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA