Sequence
atgc intronic sequence ATGC exonic sequenceCTATGCAATCTGCTTGAATAGCATTGGTTCATGGGATAATGAACTATGGATTCATGTGTCTAAGCCTCCAGAAAATGCCTACATAAAGCAAATGTTTGAAgtaagttaaaatattttgacatagaagataaaaatggtactattaacttacagtgttgtgtcactgtgctatatgatttgataaatgaactgtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G451366_T02 (Zea mays), 5'ss of exon 7
CTATGCAATCTGCTTGAATAGCATTGGTTCATGGGATAATGAACTATGGATTCATGTGTCTAAGCCTCCAGAAAATGCCTACATAAAGCAAATGTTTGAAgtaagttaaaatattttgacatagaagataaaaatggtactattaactta-cagtgttgtgtcactgtgctatatgatttgataaatgaactgtgcag
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CTATGCAATTTGCTTGAACAGTGTTGGTTCCTGGAGCAATGACCTCTGGATGCATGTATCAAAGCCTCCAGAAAATCCCTATATCAAGCAAATCTTTGAAgtatgttaat-catttgaagcttgttggtcctta-acccttgttatctgggtaatgata-gtcatattgatatctg--tgaatttatttgcttt-cag
upper sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G021784_T01 (Zea mays), 5'ss of exon 7
CTATGCAATCTGCTTGAATAGCATTGGTTCATGGGATAATGAACTATGGATTCATGTGTCTAAGCCTCCAGAAAATGCCTACATAAAGCAAATGTTTGAAgtaagttaaaatattttgacatagaagataaaaatggtactattaacttacagtgttgtgtcactgtgctatatgatttgataaatgaactgtgcag
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CTACGCAATTTGCTTGAACAATGTTGGTTCCTGGGGCAATGACCTCTGGATGCATGTATCAAAGCCTCCAGAAAATCCCTATATCAAGCAAATCTTTAAAgtatgttgat-catttgaagcttgttggtcta--taaccttagctatctgtaaggata-gtcatattgatatctg--tgaatttatttgcttt-cag
upper sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G18710.1 (Glycine max), 5'ss of exon 7
CTATGCAATCTGCTTGAATAGCATTGGTTCATGGGATAATGAACTATGGATTCATGTGTCTAAGCCTCCAGAAAATGCCTACATAAAGCAAATGTTTGAAgtaagttaaaa--tattttgacatagaagataa-aaatggtactattaacttacagtgttgtgtcactgtgctatatgatttgataaatgaactgtgcag
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CTATGCTATTTGCTTGGATAGTATTGGCTCTTGGGAAAATGAATTGTGGATTCATGTATCTAAGCCTCCAGAAAATGCCTTTATTAAGAAAATTCATGAAgtaagtgaatagtcaaagtgatgcaggctttactaaatgg----attttctaacagt--tctatcttcatgactttcaatggaaaatatg----gtgtag
upper sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G09710.1 (Glycine max), 5'ss of exon 7
CTATGCAATCTGCTTGAATAGCATTGGTTCATGGGATAATGAACTATGGATTCATGTGTCTAAGCCTCCAGAAAATGCCTACATAAAGCAAATGTTTGAAgtaagttaaaatattttgacatagaagataaaaatggtactattaacttacagtgttgtgtcactgtg-ctatatgatttgataaatgaactgtgcag
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CTATGCTATTTGCTTGGATAGTATTGGCTCTTGGGAAAATGAATTGTGGATTCATGTGTCTAAGCCTCCGGAAAATGCCTTTATTAAGAAAATTCATGAAgtaagt--gagtagtc--------aaagtggtgcaggctttactaaatgg-agtttcttacagttttatcttcatgacttaatgga-aaatattgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718905|gb|FC067348.1|FC067348EST: TTCATGTGTCTAAGCCTCCAGAAAATGCCTACATAAAGCAAATGTTTGAA GGGTTTGCAGAAGTAGCAGAAGAACTGGGGCTTAAAGTTGGCTTGAAGCAC
genomic: TTCATGTGTCTAAGCCTCCAGAAAATGCCTACATAAAGCAAATGTTTGAAgtaagttaaa ... aactgtgcagGGGTTTGCAGAAGTAGCAGAAGAACTGGGGCTTAAAGTTGGCTTGAAGCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTATGCAATCTGCTTGAATAGCATTGGTTCATGGGATAATGAACTATGGATTCATGTGTCTAAGCCTCCAGAAAATGCCTACATAAAGCAAATGTTTGAAgtaagttaaaatattttgacatagaagataaaaatggtactattaacttacagtgttgtgtcactgtgctatatgatttgataaatgaactgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA