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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCCCTCACCATTTTGATCCCAGAGGTTGAGATTCCTATTTGGGGGATTGTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAGgtccacttctcctctctccaccatcttatgtgatttatttggtatcgaaaagctccataacatatatgttgttcctaagctcaatttcttaaatttgcag

Basic information

species Vitis vinifera
transcript Vv06s0061g01230.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110419935|gb|EC986193.1|EC986193
EST:     GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAG                         GTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
genomic: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAGgtccacttct ... aaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
EST: gi|110719707|gb|EE095069.1|EE095069
EST:     GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAG                         GTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
genomic: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAGgtccacttct ... aaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
EST: gi|34543478|gb|CF511710.1|CF511710
EST:     GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAG                         GTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
genomic: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAGgtccacttct ... aaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
EST: gi|34543136|gb|CF511368.1|CF511368
EST:     GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAG                         GTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
genomic: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAGgtccacttct ... aaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
EST: gi|110428836|gb|EC995318.1|EC995318
EST:     GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAG                         GTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
genomic: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAGgtccacttct ... aaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
EST: gi|34543219|gb|CF511451.1|CF511451
EST:     GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAG                         GTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
genomic: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAGgtccacttct ... aaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT