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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTGGATGTTGCTGGTCTGAAGAGTTCAAACCTATACATCTGCAATGGCATCGCACTGTTCTTTGGGTGGTTGgtactgttcaacagactccaaaacctcagttcttttctgtgccaaaaagaggggaaaaaaaaacaaaaaaacaaagctcatttttaggtggcttgcaaaattgcatttgctaggctgcaactcttctatttcttgtcatgatataattatgctgacatgaacttctgatgccttcag

Basic information

species Vitis vinifera
transcript Vv06s0004g08450.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g08450.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G40520.1 (Glycine max), 5'ss of exon 6
GCACTTGGATGTTGCTGGTCTGAAGAGTTCAAACCTATACATCTGCAATGGCATCGCACTGTTCTTTGGGTGGTTGgtactgttcaacagactccaaaacctcagttcttttctgtgccaaaaagaggggaaaaaaaaacaaaaaaacaaagctcatttttaggtggcttgcaaaattgcatttgctaggctgcaactcttctatttcttgtcatgatataattatgctgacatgaacttctgatgccttcag
| |||||||| ||||||| || ||||| || || || ||||| || |||||||||||| ||||||||||||||||||||||||  || | ||||     | | | |  |   ||   |   ||         ||  |||     ||  |      ||  | || |   |  ||  | ||                                                                          
GTACTTGGATATTGCTGGCCTTAAGAGCTCCAAACTTTACATTTGGAATGGCATCGCATTGTTCTTTGGGTGGTTGgtactgtctaatatactct----ctttaatcttgacctcaactctaattcctctgtaatgaaatttggaa-tatgttgtatgataagttatgtaacactaatgag------------------------------------------------------------------------

upper sequence: Vv06s0004g08450.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA14G38830.1 (Glycine max), 5'ss of exon 6
GCACTTGGATGTTGCTGGTCTGAAGAGTTCAAACCTATACATCTGCAATGGCATCGCACTGTTCTTTGGGTGGTTGgtactgttcaacagactccaaa--------acctcagttcttttctgtgccaaaaagaggggaaaaaaaaacaaaaaaacaaagctcatttttaggtggcttgcaaaattgcatttgctaggctgcaactcttctatttcttgtcatgatataattatgctgacatgaacttctgatgccttcag
| |||||||||||||||| || ||||| || || || ||||| || |||||||| ||| ||||||| ||||||||||||||||  || | ||||   |        ||||||  |||  | | | |   || ||   |   || |      |  | ||   |  | |     || | ||                                                                                  
GTACTTGGATGTTGCTGGCCTTAAGAGCTCCAAACTTTACATTTGGAATGGCATTGCATTGTTCTTCGGGTGGTTGgtactgtctaatatactctctataatcttgacctcaactctaatttct-ctgtaatgaaatgtggaatatgtcgtatgataag--ttgtgtaataatgacctg----------------------------------------------------------------------------------

upper sequence: Vv06s0004g08450.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G05520.1 (Glycine max), 5'ss of exon 7
-GCACTTGGATGTTGCTGGTCTGAAGAGTTCAAACCTATACATCTGCAATGGCATCGCACTGTTCTTTGGGTGGTTGgtactgttcaacagactccaaaacctcagttct--tttctgtgccaaaaagaggggaaaaaaaaacaaaaaaacaaagctcatttttaggtggcttgcaaaattgcatttgctaggctgcaactcttctatttcttgtcatgatataattatgctgacatgaacttctgatgccttcag
 |||||||||| |||||| ||| ||||| || || || ||| |||| |||||||| ||| ||||||| ||||||||||||||||  || | |||    | ||||| ||||  || |  ||    |   |  ||||      |     |   |  | |   |||| | |   || |                                                                                 
GGCACTTGGATATTGCTGATCTTAAGAGCTCCAAACTTTACGTCTGGAATGGCATTGCATTGTTCTTCGGGTGGTTggtactgtataatatacttttga-cctcaattctaattccattgtagtatccaaaggaactgcttatggtcatgtatggttatattttggttttttttctc-------------------------------------------------------------------------------

upper sequence: Vv06s0004g08450.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G31750.1 (Glycine max), 5'ss of exon 7
GCACTTGGATGTTGCTGGTCTGAAGAGTTCAAACCTATACATCTGCAATGGCATCGCACTGTTCTTTGGGTGGTTGgtactgttcaacagactccaaaacctcagttcttttctgtgccaaaaagaggggaaaaaaaa-acaaaaaaacaaagctcatttttaggtggcttgcaaaattgcatttgctaggctgcaactcttctatttcttgtcatgatataattatgctgacatgaacttctgatgccttcag
|||||||||| |||||||||| ||||| || || || ||| |||| |||||||| ||  ||||||| ||||||||||||||||  || | |||       |||| |||| |||| |   |  |   |  | ||      |     |   || | |       || | | ||  ||| ||                                                                           
GCACTTGGATATTGCTGGTCTTAAGAGCTCCAAACTTTACGTCTGGAATGGCATTGCTTTGTTCTTCGGGTGGTTGgtactgtataatatacttttgg-tctcaattctattctattatagtacctgaaggaattgcttatggtcatgtaaggttatggaccagtttgttt--aaactt---------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688769|gb|EC925291.1|EC925291
EST:     GTTCAAACCTATACATCTGCAATGGCATCGCACTGTTCTTTGGGTGGTTG                         GTTGCAAGGATTCTTTTATTCATCTTCTTTTTCTACCACATGATAATCCAT
genomic: GTTCAAACCTATACATCTGCAATGGCATCGCACTGTTCTTTGGGTGGTTGgtactgttca ... atgccttcagGTTGCAAGGATTCTTTTATTCATCTTCTTTTTCTACCACATGATAATCCAT
EST: gi|122689520|gb|EC940529.1|EC940529
EST:     GTTCAAACCTATACATCTGCAATGGCATCGCACTGTTCTTTGGGTGGTTG                         GTTGCAAGGATTCTTTTATTCATCTTCTTTTTCTACCACATGATAATCCAT
genomic: GTTCAAACCTATACATCTGCAATGGCATCGCACTGTTCTTTGGGTGGTTGgtactgttca ... atgccttcagGTTGCAAGGATTCTTTTATTCATCTTCTTTTTCTACCACATGATAATCCAT