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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAGgtagatttctgattaatgcttaaaaattttaatatctaattcgtgtttgttacaaaccttatgatcctctttaggtgtccactgtccagattaaagagatgatttcttttctctattatgtagtttcattatcatgcttgacttagttttgacattgtgtag

Basic information

species Vitis vinifera
transcript Vv06s0004g07050.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30131063|gb|CB916402.1|CB916402
EST:     GATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAG                         GTTGAAGTTTCATCGAACCTTCTGTCAGAGTTGCCTGAGACATTTAGCAAT
genomic: GATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAGgtagatttct ... cattgtgtagGTTGAATTTTCATCGAATCTTCTGTCAGAGTTGCCTGAGACATTTAGCAAT
EST: gi|110374623|gb|EC939514.1|EC939514
EST:     GATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAG                         GTTGAATTTTCATCGAACCTTCTGTCAGAGTTGCCTGAGACATTTAGCAAT
genomic: GATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAGgtagatttct ... cattgtgtagGTTGAATTTTCATCGAATCTTCTGTCAGAGTTGCCTGAGACATTTAGCAAT
EST: gi|22012587|gb|BQ797621.1|BQ797621
EST:     GATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAG                         GTTGAATTTTCATCGAACCTTCTGTCAGAGTTGCCTGAGACATTTAGCAAT
genomic: GATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAGgtagatttct ... cattgtgtagGTTGAATTTTCATCGAATCTTCTGTCAGAGTTGCCTGAGACATTTAGCAAT
EST: gi|77577790|gb|DV217645.1|DV217645
EST:     GGATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAG                         GTTGAATTTTCATCGAACCTTCTGTCAGAGTTGCCTGAGACATTTAGCAAT
genomic: GGATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAGgtagatttct ... cattgtgtagGTTGAATTTTCATCGAATCTTCTGTCAGAGTTGCCTGAGACATTTAGCAAT
EST: gi|110375491|gb|EC940480.1|EC940480
EST:     GATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAG                         GTTGAATTTTCATCGAACCTTCTGTCAGAGTTGCCTGAGACATTTAGCAAT
genomic: GATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAGgtagatttct ... cattgtgtagGTTGAATTTTCATCGAATCTTCTGTCAGAGTTGCCTGAGACATTTAGCAAT
EST: gi|110391067|gb|EC956021.1|EC956021
EST:     GATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAG                         GTTGAATTTTCATCGAACCTTCTGTCAGAGTTGCCTGAGACATTTAGCAAT
genomic: GATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAGgtagatttct ... cattgtgtagGTTGAATTTTCATCGAATCTTCTGTCAGAGTTGCCTGAGACATTTAGCAAT
EST: gi|45771435|gb|CN007287.1|CN007287
EST:     GATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAG                         GTTGAATTTTCATCGAATCTTCTGTCAGAGTTGCCTGAGACATTTAGCAAT
genomic: GATAAGCACCATTCCTACACAAATAGGCGATTGTAATTCTCTAATTGAGgtagatttct ... cattgtgtagGTTGAATTTTCATCGAATCTTCTGTCAGAGTTGCCTGAGACATTTAGCAAT