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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatcacagctctaatcattgaagtgaggaagattgatatgacttttggttgtaacag

Basic information

species Vitis vinifera
transcript Vv06s0004g06920.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 7
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatt-tatattttta------aagttattcatcacagctctaatcattgaa--gtgaggaagattgatatgact----tttggttgtaacag---------
|||||| | |||||||| |||||||||||||| |||||||| |||||||| || ||||| ||||| |||||||| |||| ||| ||||||||||||||||||||| |||  ||||       || |  ||   ||||          ||| |  ||  || |  |  | || |||    |||||||| |||           
GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatattcttttcctgattaattgttttgccacaatggcgtatgttggattgtttggcaagtgaacataactctcttttggttgaaactcggtgtgcag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g18310.1 (Oryza sativa), 5'ss of exon 6
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaa-gttattc---atcacagctc-taatcattgaagtgaggaagattgatatgacttttggttgtaacag---
||||| ||||||||||| ||||| || ||||| || ||||| |||||||| || ||||| ||||| |||||||| || ||||||||||||||||||||||||    |||  || |   |||  |    || |  |||| || |||| | | |    |  | | || |    ||  |||  ||  |   
GTTGGGTTGCCAGCTCGTGGTAAGACCTTTACAGCGGCTAAGCTTACAAGGTACCTTCGATGGTTAGGTCATGAAACAAAACACTTCAATGTTGGAAAGgtgcgcaatagcttaagctgtttctttatatgattgctcatattcatggtattagccactaatcatgttttcttacgtttcaattgtag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM5G824405_T01 (Zea mays), 5'ss of exon 7
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatcacagctctaatcattgaagtgaggaagattgatatgacttttggttgtaacag-------
|||||  | |||||||||||||| || ||||| ||||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||||||||||||   |    ||||  | |||  |   ||    |||       |||      || | ||    | || | | |            
GTTGGGCTACCAGCTCGAGGTAAGACCTTTACAGCAGCTAAACTTACAAGATATCTCCGATGGTTAGGTCATGAAACAAAACACTTCAATGTTGGAAAGgtgataatttagcttaagctaatt--ttgtagagaaaattgcatgtgtgtatggtatcgctaatcatgtttgctattttgttttctag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 7
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaa-------agttattcatcacagct------ctaatcattgaagtgaggaagattgatatgacttttggttgtaacag------------
|||||| | |||||||| |||||||| || ||||||| ||| |||||||| || ||||| |||||||| ||||| || | ||| ||||||||||| ||||| ||| ||||| |||        |  | |    || || |       | |   ||    |  | || ||| ||     |||   ||||   |             
GTTGGCCTACCAGCTCGTGGTAAAACCTTCACTGCAGTTAAGCTTACAAGGTACCTTCGTTGGTTGGGCCATGAAACTAGACATTTCAATGTTGGGAAGgtaatt-atattgttactccgattaactgtcttgcagagttaatgtgtttacttttcttatttgcaaaattaattgagttttcttttgttgaaaatatgtgtgcag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 9
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatc---acagctctaat---cattgaagt-gaggaagattgatatgacttttggttgtaacag----------------------------------
|| ||  ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||| |||||  || | ||| ||||  | |||||||     |     |||   | | ||  | | |  | | ||  |  |  |   ||   |||                                    
GTGGGTCTGCCAGCCCGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgttcacattcttaacatcattcatctgtttaatcaaaatatacttcgacctagtgcgaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G27870.1 (Glycine max), 5'ss of exon 8
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatcac----agctctaatcattgaagtgagg-aagattgatatgacttttggttgtaacag----------------------------------
|| ||  |||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||| |||||  |||| ||| ||||  | |||||||      | |  ||  | ||||  |   | || | ||  |  |  |   ||   |||                                    
GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGTTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgtttacattcttaacatcattcatctgtttaatcaatatactttgacctagtgcaaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 7
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatcacag----ctctaatc----attgaagtgaggaagattgatatgac--ttttggttgtaacag----------------------
||  | |||||||||||||| || ||||  ||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||| |||||  ||   ||| || |  | |||| ||  ||    |  || ||    ||  ||  || ||      ||||| |   ||||  | |||||                       
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttctcattcttgac-tcattcttcttagtaatcagtagtcttgtatctaatggaagacaggaaatatgtcaagtttgaatttaacaaaacttatgtttcaatgttgcag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 13
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatcac----agctctaatcattgaagtgagg-aagattgatatgacttttggttgtaacag----------------------------------
|| ||  |||||||  ||||||||||||| ||||||||||||||||||||||||||||  ||||| |||||| | |||||||||||||||||||| |||||  |||| ||| ||||  | |||||||      | |  ||  | | ||  |   | || | ||  |  |  |   ||   |||                                    
GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCATTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgtttacattcttaacatcattcatctgtttaatcaatatacttcgacctagtgcaaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 7
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatcacagct-ctaatcat-----------tgaagtgagg-aagattgatatgacttttggttgtaacag---------------------
||  | |||||||||||||| || ||||  |||||||||||||| |||||||||||||| ||||| |||||| | |||||||||||||||||||| |||||  || | ||| || |  | |||| ||  ||     ||||||           | | |  ||| | ||   || | |  ||||  | |||||                      
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttcacattcttgac-tcattcttcttagtaatcaatcatcttgttgtatctaacgaaaggcaggaaatatgtcaagtttgaatttaacacacttatgtttcaatgttgcag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatcacagct-----ctaatcattgaagtgag-gaagattgatatgacttttggttgtaacag------------------
||||||||||| |||||||| || |||||||||||||| ||  | ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||||| |  ||| || ||  | | |||| | |    |     || ||| |   | |  | ||   ||| |   |   |||  |  ||||                   
GTTGGCTTGCCTGCTCGAGGAAAGACTTTTACTGCAGCAAAGTTGACAAGATATCTACGCTGGTTGGGACATGATACTAAACATTTTAATGTTGGAAAGgttagctattttgttgcaatgattcttgattttttttagcttatcctgtcattacgcgacccttgttggaaagattgactcaaacattgctccgtttctttgcag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S235_92V6.1 (Physcomitrella patens), 5'ss of exon 6
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttt---------------taaagttattcatcacagctctaatcattgaagtgaggaagattgatatgacttttggttgtaacag-----
|||||| | || |||||||| || |||||||| |||||||| || || ||||||||  | ||| | || ||||| |||||||||||||||||||||||||| |  |   | |                | ||  || |  |   |||| |||  ||||    | |||   |   | |     |||||| |          
GTTGGCCTACCTGCTCGAGGGAAGACTTTTACAGCAGCTAAGCTGACGAGATATCTCAGGTGGCTTGGCCATGATACCAAACACTTCAATGTTGGAAAGgtaagcttagtctgctcattagtagacagtgaaagtagtattttgagctttaactattgtgagggggacagtcattgtc-tacttggttctggtgtttagt

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S215_89V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcat-cacagctctaatcattgaagtgaggaagattgatatgacttttggttgtaacag------------------------------------------------------------------------------------------------------------------------
||||| || || ||||| || || || || |||||||||||||| || |||||| | || ||||| |||||||| ||||| |||||||||||||| |||||     || |||||| |    ||  | | |||||    ||| |    | |      ||  |     ||||||||| |  |                                                                                                                         
GTTGGGTTACCGGCTCGTGGAAAGACATTCACTGCAGCTAAACTGACCAGATATTTGCGGTGGTTAGGTCATGACACCAAGCACTTCAATGTTGGCAAGgt-----atgtttttagaaaactttgtacgcagctggtgtcaatcttctcaac----ttatttcttgttttggttgcatgattttgggatgattatattttgtgtacccaatatctaaggtgctctttcaggttttagccttagagtgcacactttttgcagtggagtattttgatgcgattgtgcttttgatgtttcacag

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ07288 (Selaginella moellendorffii), 5'ss of exon 3
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatcacagctctaatcattgaagtgaggaagattgatatgacttttggttgtaacag
|| ||||| |||||  | || |||||||| ||||| |  || || |||||||||||||| ||| | |||||||| || ||||||||||| |||||||| || | | |  |   |    || |     |  ||||| |   ||             ||| | ||| ||||  |   |    
GTGGGCTTACCAGCAAGGGGGAAAACTTTCACTGCTGTCAAGCTAACAAGATATCTTCGTTGGCTTGGTCATGACACTAAACACTTCAACGTTGGAAAAgtcagtca-gtcactttgtttgtcttgaagggctctcaggttt-------------ttggtgtgatttttcttaccag---

upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ07831 (Selaginella moellendorffii), 5'ss of exon 3
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatcacagctctaatcattgaagtgaggaagattgatatgacttttggttgtaacag
|| ||||| |||||  | || |||||||| ||||| |  || || || ||||||||||| ||| | |||||||| || ||||||||||| |||||||| || | | |  |   |    || |     |  ||||| |   ||             ||| | ||| ||||  |   |    
GTGGGCTTACCAGCAAGGGGGAAAACTTTCACTGCTGTCAAGCTAACCAGATATCTTCGTTGGCTTGGTCATGACACTAAACACTTCAACGTTGGAAAAgtcagtca-gtcactttgtttgtcttgaagggctctcaggttt-------------ttggtgtgatttttcttaccag---