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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAGCAGTGGACAAAAATTATCACTTGAAAATGAAGTCGTCAAGGTTTATCTTCAGTGAAATAAATCAAAAGTTCCCCATCATGCCATTTACAGCCAGgtatactggctttttcactatttcaaaaggtctccatttgtctctcaatttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatag

Basic information

species Vitis vinifera
transcript Vv06s0004g06870.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06870.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G07420.1 (Glycine max), 5'ss of exon 7
AAAGAGCAGTGGACAAAAATTATCACTTGAAAATGAAGTCGTCAAGGTTTATCTTCAGTGAAATAAATCAAAAGTTCCCCATCATGCCATTTACAGCCAGgtatact------ggctttttcactatttcaaaaggtctccatttgtctctcaa--tttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatag
| ||||| || ||||| |  ||||||||||| |||||  | || ||||| || |||||||||||||  |||||||| ||||||||||| ||  | || ||||   ||      |    | | | | |||||| |   ||   |||  |    |   ||| || |   | | |          ||||  ||| |      ||| | ||||
AGAGAGCTGTTGACAAGAGCTATCACTTGAAGATGAAAGCATCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCCATCATGCCCTTCTCTGCAAGgttagcttgatatgataatctaaatgtttcaaca---ctttgtttaacctgaaggttttgaatttgggttctctttgttgcacattaaatcttagctgtttcataatag

upper sequence: Vv06s0004g06870.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G43390.1 (Glycine max), 5'ss of exon 7
AAAGAGCAGTGGACAAAAATTATCACTTGAAAATGAAGTCGTCAAGGTTTATCTTCAGTGAAATAAATCAAAAGTTCCCCATCATGCCATTTACAGCCAGgtatactggctttttcac-tatttcaaaaggtctcca-tttgtctctcaatttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatag
| || || || ||||| | |||||||||||| |||||  |||| ||||| || |||||||||||||  ||||| || || |||||||||||  | || |||||   ||  | || ||  | ||| | |  || || |  | || |   ||||   | | ||  ||   | |  |    |||| | ||  |             
AGAGGGCTGTTGACAAGAGTTATCACTTGAAGATGAAAGCGTCTAGGTTCATTTTCAGTGAAATAAGCCAAAAATTTCCAATCATGCCATTCTCTGCTAGgtaatttgattattgcatgtttttgatactgtgtctagctggtgttctaattattattcttatttcctaaaattccatttgttttataatag-----------

upper sequence: Vv06s0004g06870.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G29420.1 (Glycine max), 5'ss of exon 7
AAAGAGCAGTGGACAAAAATTATCACTTGAAAATGAAGTCGTCAAGGTTTATCTTCAGTGAAATAAATCAAAAGTTCCCCATCATGCCATTTACAGCCAGgtatactggctttttc--actatttcaaaa---ggtctccatttgt--ctctcaatttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatag
| ||||| || ||||| |  ||||| || || |||||  | || ||||| || |||||||||||||  |||||||| ||||||||||||||  |||| ||||   || | ||   |  | | |||||| |    || |  | | |    | | |||||    | |   || | |    ||  |||  ||  |      ||| | ||||
AGAGAGCTGTTGACAAGAGCTATCATTTAAAGATGAAAGCATCTAGGTTCATTTTCAGTGAAATAAGCCAAAAGTTTCCCATCATGCCATTCTCAGCAAGgttagcttgattcacctaaatgtttcaatacttagtttaaactcgaggttttgaatttgggttctc-tttgttacctgttaaattaaatgttaaccctttcataatag

upper sequence: Vv06s0004g06870.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S264_34V6.1 (Physcomitrella patens), 5'ss of exon 6
AAAGAGCAGTGGACAAAAATTATCACTTGAAAATGAAGTCGTCAAGGTTTATCTTCAGTGAAATAAATCAAAAGTTCCCCATCATGCCATTTACAGCCAGgtatactggctttttcactatttcaaaaggtctccatttgtctctcaatttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatag-----
| || || |||||||| ||||||||| ||||||||||| | ||||| || |||||||| ||||| |||   |||||||| || ||||| || || || |||||  |||   |||   | | |   | ||  | | |||| |  ||| ||      | || |||||    | ||      ||||| | ||   |   |         
AGAGGGCTGTGGACAAGAATTATCACCTGAAAATGAAGGCATCAAGATTCATCTTCAGCGAAATCAATACCAAGTTCCCTATTATGCCTTTCACTGCTAGgta--ctg--ctttctgcaactcgtagag--cgctattttttcctccataattcatgtttcttttagctcttttttacttatcactatgatctgtgtgggaagtaa

upper sequence: Vv06s0004g06870.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ35350 (Selaginella moellendorffii), 5'ss of exon 6
AAAGAGCAGTGGACAAAAATTATCACTTGAAAATGAAGTCGTCAAGGTTTATCTTCAGTGAAATAAATCAAAAGTTCCCCATCATGCCATTTACAGCCAGgtatactggctttttcactatttcaaaaggtctccatttgtctctcaatttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatag
     || |||||||| |  ||||| ||||| |||||| | || |||||||| |||||||||||||  || ||||||||  ||||||| ||||| |||||| |   |   || |||  || ||| |      ||| | ||    | |  | ||| |     ||| |||                                 
----GGCCGTGGACAAGAGCTATCATTTGAAGATGAAGGCCTCGAGGTTTATATTCAGTGAAATAAGCCAGAAGTTCCCGCTCATGCCCTTTACCGCCAGGCAAgtt---ttcttctgtaattcta------tccttctg---gtgagctcaaatttgcattttccagggag-----------------------------

upper sequence: Vv06s0004g06870.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ10608 (Selaginella moellendorffii), 5'ss of exon 6
AAAGAGCAGTGGACAAAAATTATCACTTGAAAATGAAGTCGTCAAGGTTTATCTTCAGTGAAATAAATCAAAAGTTCCCCATCATGCCATTTACAGCCAGgtatactggctttttcactatttcaaaaggtctccatttgtctctcaatttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatag
     || |||||||| |  ||||| ||||| |||||| | || |||||||| |||||||||||||  || ||||| ||  ||||||| ||||| |||||| |   ||  || |||  || ||| |      ||| |  |    | |  | ||| |     ||| |||                                 
----GGCCGTGGACAAGAGCTATCATTTGAAGATGAAGGCCTCGAGGTTTATATTCAGTGAAATAAGCCAGAAGTTTCCGCTCATGCCCTTTACCGCCAGGCAAgttgttttcttctgtaattcta------tccttccg---gtgagctcaaatttgcattttccagggag-----------------------------