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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCGTTATGTGGCTGGACTTTGTTACTTACTTGCATCACCATGGCTATGAGCAAAAACTTCCATGGTATCGGGGCAAGgtactgataaacaaagatatggtcagaacactaatttgagttcttggattcttaacttgatggttagctgcagcctgcaaccaaaatagatttcaggggtccaaccttgctgagaagtacattttatgtagaatggatagagcctaatgctttagttgtcattatgttggtatggaacag

Basic information

species Vitis vinifera
transcript Vv06s0004g06730.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06730.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA14G37350.2 (Glycine max), 5'ss of exon 6
GTTTTCGTTATGTGGCTGGACTTTGTTACTTACTTGCATCACCATGGCTATGAGCAAAAACTTCCATGGTATCGGGGCAAGgtactgataaacaaagatatggtcagaacactaatttgagttcttggattcttaacttgatggttagctgcagcctgcaaccaaaatagatttcaggggtccaaccttgctgagaagtacattttatgtagaatggatagagcctaatgctttagttgtcattatgttggtatggaacag
    | |||||||||||||||||||| || |||||||||||||||||  || | || ||||| || |||||||| |||||||||       ||||| |||     | || | | | | ||   |||  ||  |  |    |   |   || |    |              |||  | |||  |  || | | | |  || |      | |  |  || | |                                       
----TTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCATCATCAGAAACTGCCTTGGTATCGCGGCAAGGTA-------ACAAAAATAAATAGAAAATAgtgagt-gaacacttaaatgttagatactaccttcttcttcttttttttttt--------tttttgaggttaatgctagataatagctagaaa--gagaaagaaagacaaa---------------------------------------

upper sequence: Vv06s0004g06730.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA14G37350.1 (Glycine max), 5'ss of exon 6
GTTTTCGTTATGTGGCTGGACTTTGTTACTTACTTGCATCACCATGGCTATGAGCAAAAACTTCCATGGTATCGGGGCAAGgtactgataaacaaagatatggtcagaacactaatttgagttcttggattcttaacttgatggttagctgcagcctgcaaccaaaatagatttcaggggtccaaccttgctgagaagtacattttatgtagaatggatagagcctaatgctttagttgtcattatgttggtatggaacag
 | || |||||||||||||||||||| || |||||||||||||||||  || | || ||||| || |||||||| |||||||||       ||||| |||     | || | | | | ||   |||  ||  |  |    |   |   || |    |              |||  | |||  |  || | | | |                                                                 
ATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCATCATCAGAAACTGCCTTGGTATCGCGGCAAGgta-------acaaaaataaatagaaaatagtgagt-gaacacttaaatgttagatactaccttcttcttcttttttttttt--------tttttgaggttaatgctagataatag----------------------------------------------------------------

upper sequence: Vv06s0004g06730.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G39230.1 (Glycine max), 5'ss of exon 6
GTTTTCGTTATGTGGCTGGACTTTGTTACTTACTTGCATCACCATGGCTATGAGCAAAAACTTCCATGGTATCGGGGCAAGgtactgataaacaaagatatggtcagaacactaatttgagttcttggattcttaact-tgatggttagctgcagcctgcaaccaaaatagatttcaggggtccaaccttgctgagaagtacattttatgtagaatggatagagcctaatgctttagttgtcattatgttggtatggaacag
 | || |||||||||||||||||||| || |||||||||||||||||  |  | || ||||| || ||||| || |||||||||       ||||| |||     | || | |   | ||   |||  || |   |   | ||   ||     ||     ||   |  || | |  |    |  ||| ||                                                                        
ATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCACCACCAGAAACTGCCTTGGTACCGCGGCAAGgta-------acaaaaataaatagaaaatagtgggt-gaacacttaaatgcgagatagtaatacctaaaaaaagaaaaaaatataggtataata-aataatataacttt------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110379212|gb|EC944392.1|EC944392
EST:     ACTTGCATCACCATGGCTATGAGAAAAAACTTCCATGGTATCGGGGCAAG                         GAATGGAGCTATCTACGAGGAGGGCTAACAACGGTTGATCGTGACTATGGC
genomic: ACTTGCATCACCATGGCTATGAGCAAAAACTTCCATGGTATCGGGGCAAGgtactgataa ... tatggaacagGAATGGAGCTATCTACGAGGAGGGCTAACAACGGTTGATCGTGACTATGGC
EST: gi|110377424|gb|EC942487.1|EC942487
EST:     ACTTGCATCACCATGGCTATGAGAAAAAACTTCCATGGTATCGGGGCAAG                         GAATGGAGCTATCTACGAGGAGGGCTAACAACGGTTGATCGTGACTATGGC
genomic: ACTTGCATCACCATGGCTATGAGCAAAAACTTCCATGGTATCGGGGCAAGgtactgataa ... tatggaacagGAATGGAGCTATCTACGAGGAGGGCTAACAACGGTTGATCGTGACTATGGC