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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATTGCACCACAGTATTCTGGTGTTCTACATGgtacctttattatctatttcatcataaatctactgtatttaatttgagtcattaatttaaatatcatttctcctgattgccttacttctagagctacatt...

Basic information

species Vitis vinifera
transcript Vv06s0004g06040.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06040.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA14G36980.1 (Glycine max), 5'ss of exon 7
GAGATTGCACCACAGTATTCTGGTGTTCTACATGgtacctttattatctattt--catcataaat---ctactgtatttaatttgagtcattaatttaaatatcatttctcctgattgccttacttctagagctacatt
||||||||||||| ||||||||||||| |||||||||   || ||||||  |    ||  || ||    |  |||     |    | | | |||  | | || ||  |   |   |     ||| | |  |   |    
GAGATTGCACCACGGTATTCTGGTGTTTTACATGgtatgctt-ttatcttgtggggattgtacatgttttgttgttccacagcgcatttaataagattagtagcacattgtcatctgtaaatacatttgaaatca----

upper sequence: Vv06s0004g06040.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G38930.1 (Glycine max), 5'ss of exon 8
GAGATTGCACCACAGTATTCTGGTGTTCTACATGgta--cctttattatct---atttcatcataaatctactgtatttaatttgagtcattaatttaaatatcatttctcctgattgccttacttctagagctacatt
||||||||||| ||||||||||||||| |||||||||  | |||||  | |     |||  |||   | |  |||    || |  | | | |||  | | || ||| |   |   |     ||| | |  |   |    
GAGATTGCACCGCAGTATTCTGGTGTTTTACATGgtatgcttttatcttgtggggattctacatgt-tttggtgttccaaaatgcatttaataagattagtagcatattgtcatctgtaaatacatttgaaatca----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720682|gb|FC070620.1|FC070620
EST:     GAGATTGCACCACAGTATTCTGGTGTTCTACATG                         GATTGTCAAATACGGCTGGAACATTTGCTGCCATTGTAGGAACAATTGGAG
genomic: GAGATTGCACCACAGTATTCTGGTGTTCTACATGgtacctttat ... gtgctgacagGATTGTCAAATACGGCTGGAACATTTGCTGCCATTGTAGGAACAATTGGAG