Sequence
atgc intronic sequence ATGC exonic sequenceCAATGTTGTGGAGAAGTGTTTAACTTTTGGCGGTCCTGCTGAGCGCCAGATCCTGGTGAATGAGATGCTTGGCACTACTGATGAGAATGAGCCTCTTCAGgtttggccaatcactatttacttttctgccactagatggaatgaccaagtcaaatgggggagtgtttctatataaggcctttgattggtagtggagccag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g62650.1 (Oryza sativa), 5'ss of exon 8
CAATGTTGTGGAGAAGTGTTTAACTTTTGGCGGTCCTGCTGAGCGCCAGATCCTGGTGAATGAGATGCTTGGCACTACTGATGAGAATGAGCCTCTTCAGgtttggccaatcactatt-tacttttctgccactag-atggaatgaccaagtcaaatgggggagtgtttctatataaggcctttgattggtagtggagccag------
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AAATGTTGTTGAGAAGTGTTTAACATTTGGCGGACCTGCAGAGCGGGAAGTTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAGgttt------tcattatgatatttgtgttttattggtgtccaattatctcatggattagagcttcatatttttctgggggcagtag--ggcaattcaatgcgccttga
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G14500.1 (Glycine max), 5'ss of exon 9
CAATGTTGTGGAGAAGTGTTTAACTTTTGGCGGTCCTGCTGAGCGCCAGATCCTGGTGAATGAGATGCTTGGCACTACTGATGAGAATGAGCCTCTTCAGgtttggccaatcactatttact--tttctgccactagatggaatgaccaagtcaaatgggggagtgtttctatataaggcctttgattggtagtggagccag
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CAATGTAGTAGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTGAATGAGATGCTTGGCACCACCGATGAAAATGAGCCTCTTCAGgtttgttaaactttctcttcctaatatatgcctttccctttctttattggagcaaattag--aataccatcataaatgatcagtaatggtcttcttcatgat
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G06430.1 (Glycine max), 5'ss of exon 7
CAATGTTGTGGAGAAGTGTTTAACTTTTGGCGGTCCTGCTGAGCGCCAGATCCTGGTGAATGAGATGCTTGGCACTACTGATGAGAATGAGCCTCTTCAGgtttggccaa--tcactatttacttttctgccactagatggaatgaccaagtcaaatgggggagtgtttcta-tataaggcctttgattggtagtggagccag
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CAATGTTGTGGAGAAATGTTTGACCTTTGGTGGTCCTTCTGAGCGCCAATTACTAGTGTGTGAGATGCTTGGCACCACAGATGAAAATGAGCCTCTTCAGgtttgttgaactttctcatcctgacgcatgcctctccctctt-tatttgaggcaaattagaaggcaatgctagtatacattgttaggct--cactgtagccta
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G04060.2 (Glycine max), 5'ss of exon 9
CAATGTTGTGGAGAAGTGTTTAACTTTTGGCGGTCCTGCTGAGCGCCAGATCCTGGTGAATGAGATGCTTGGCACTACTGATGAGAATGAGCCTCTTCAGgtttggccaatcactatttacttttctgccactagatggaatgaccaagtcaaa----------tgggggagtgtttctatataaggcctttgattggtagtggagccag
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AAATGTTGTGGAGAAGTGTTTGACCTTTGGAGGTCCTTCTGAACGCCAATTACTTGTGAATGAGATGCTTGGTTCCACAGATGAAAATGAGCCTCTTCAGgtttttct--tttttacctatatctccacc-ctccataaaaaaaaaaactcaatccccctttttttgagacaatttggtatataaagatat--attgatgataat-----
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G14550.1 (Glycine max), 5'ss of exon 10
CAATGTTGTGGAGAAGTGTTTAACTTTTGGCGGTCCTGCTGAGCGCCAGATCCTGGTGAATGAGATGCTTGGCACTACTGATGAGAATGAGCCTCTTCAGgtttggccaatcactatttact--tttctgccactagatggaatgaccaagtcaaatgggggagtgtttctatataaggcctttgattggtagtggagccag
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CAATGTTGTAGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTGAGTGAGATGCTTGGGACCACCGATGAAAATGAGCCTCTTCAGgtttgttaaactttctcttcctaatatatgcctttccctttctttattggagcaaattag--aataccatcataaatgatcagtaatggtcttcttcatgat
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G14530.1 (Glycine max), 5'ss of exon 8
CAATGTTGTGGAGAAGTGTTTAACTTTTGGCGGTCCTGCTGAGCGCCAGATCCTGGTGAATGAGATGCTTGGCACTACTGATGAGAATGAGCCTCTTCAGgtttggccaatcactatttacttttctgccactagatggaatgaccaagtcaaatgggggagtgtttcta-tataaggcctttgattggtagtggagccag--
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CAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTGAGTGAGATGCTTGGCTCCACAGATGAAAATGAACCTCTTCAGgtgtgttgaaccttctcttcctattatattcctgcacctg-tatttgaggcaaattagaaggcaatgctagtatacattgttaggcccgctgt--agcctact
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G06450.1 (Glycine max), 5'ss of exon 8
CAATGTTGTGGAGAAGTGTTTAACTTTTGGCGGTCCTGCTGAGCGCCAGATCCTGGTGAATGAGATGCTTGGCACTACTGATGAGAATGAGCCTCTTCAGgtttggccaatcactatttact--tttctgccactagatggaat--gaccaagtcaaatgggggagtg-tttctatataaggcctttgattggtagtggagccag
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CAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAACGCCAATTACTAGTGAGTCAGATGCTTGGCACCACAGATGAAAACGAACCTCTTCAGgtttgttgaagtttctcttcctaatatatgcctctccctctcttttatttgagacaaattagaaggcaatgttaatattcgttgttaggcccactgtagc-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32458085|gb|CD799259.1|CD799259EST: GGTGAATGAGATGCTTGGCACTACTGATGAGAATGAGCCTCTCTTCAG GCTATGATGAAAGATCAGTTTGCAAACTATGTTGTACAAAAGGTGCTGGA
genomic: GGTGAATGAGATGCTTGGCACTACTGATGAGAATGAG-C-CTCTTCAGgtttggccaa ... gtgcatctagGCTATGATGAAAGATCAGTTTGCAAACTATGTTGTACAAAAGGTGCTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATGTTGTGGAGAAGTGTTTAACTTTTGGCGGTCCTGCTGAGCGCCAGATCCTGGTGAATGAGATGCTTGGCACTACTGATGAGAATGAGCCTCTTCAGgtttggccaatcactatttacttttctgccactagatggaatgaccaagtcaaatgggggagtgtttctatataaggcctttgattggtagtggagccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggag