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GTCCATTGTGAATTGAGGAAATGGCTTCATGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcctgtttcacatccatttccatacccatattatccattaaatgaaaacatgctaattatccagtaaaaacaagtttttcagaatggaagtctc...
species | Vitis vinifera |
transcript | Vv06s0004g04800.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACACAACTAGATGTGGEST: gi|110390656|gb|EC955578.1|EC955578
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACACAACTAGATGTGGEST: gi|351028511|gb|FQ444792.1|FQ444792
genomic: TAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGGEST: gi|110389346|gb|EC954175.1|EC954175
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACACAACTAGATGTGGEST: gi|22015534|gb|BQ800568.1|BQ800568
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACACAACTAGATGTGGEST: gi|34551021|gb|CF519221.1|CF519221
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGGEST: gi|33409412|gb|CF215039.1|CF215039
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACACAACTAGATGTGGEST: gi|51989908|gb|CV179363.1|CV179363
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGTCAACGCAACTAGATGTGGEST: gi|110378426|gb|EC943557.1|EC943557
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACACAACTAGATGTGGEST: gi|110692722|gb|EE068329.1|EE068329
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACACAACTAGATGTEST: gi|110395870|gb|EC961544.1|EC961544
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGT
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGGEST: gi|349826936|gb|FQ419027.1|FQ419027
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGGEST: gi|110404715|gb|EC970203.1|EC970203
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACACAACTAGATGTGGEST: gi|32461078|gb|CD802252.1|CD802252
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TGATAATGCGGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACACAACTAGATGTGGEST: gi|161714171|gb|FC062916.1|FC062916
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TGATAATGCTGGAGATGA-GTTGCTGC-TCAACTAGAAT-ATTTACGGAG GT-CTGTAA-TGGAGCAA-CTGCAA-GAAT-GACA-CGCA-CTAGATGTGEST: gi|110364963|gb|EC928597.1|EC928597
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTG
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACACAACTAGATGTGGEST: gi|110411583|gb|EC977303.1|EC977303
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACACAACTAGATGTGGEST: gi|33409496|gb|CF215123.1|CF215123
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
EST: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAG GTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACACAACTAGATGTGG
genomic: TGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcct ... ccaattgcagGTTCTGTAAATGGAGCAAACTGCAAAGAATTGACAACGCAACTAGATGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCATTGTGAATTGAGGAAATGGCTTCATGATAATGCTGGAGATGAAGTTGCTGCATCAACTAGAATTATTTACGGAGgtatcatcctgtttcacatccatttccatacccatattatccattaaatgaaaacatgctaattatccagtaaaaacaagtttttcagaatggaagtctc
- - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatggaa