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GATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgtatttgcatctttcatggttttcttaggtttgttttttatttaaaaaaaaaaaaaggaaaagaaaagaaaagaaggaaaataggatgaaaaatctctat...
species | Vitis vinifera |
transcript | Vv06s0004g04390.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAG GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTEST: gi|33408202|gb|CF213829.1|CF213829
genomic: TCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgtatttgcat ... tgacttacagGTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGT
EST: TCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAG GTGCGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTEST: gi|33407209|gb|CF212836.1|CF212836
genomic: TCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgtatttgcat ... tgacttacagGTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGT
EST: TCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAG GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTEST: gi|30297461|gb|CB974255.1|CB974255
genomic: TCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgtatttgcat ... tgacttacagGTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGT
EST: TCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAG GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTEST: gi|33407983|gb|CF213610.1|CF213610
genomic: TCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgtatttgcat ... tgacttacagGTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGT
EST: TCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAG GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTCTGATGTEST: gi|56408375|gb|CX016627.1|CX016627
genomic: TCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgtatttgcat ... tgacttacagGTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGT
EST: TCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAG GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTEST: gi|33406260|gb|CF211887.1|CF211887
genomic: TCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgtatttgcat ... tgacttacagGTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGT
EST: TCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAG GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGT
genomic: TCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgtatttgcat ... tgacttacagGTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgtatttgcatctttcatggttttcttaggtttgttttttatttaaaaaaaaaaaaaggaaaagaaaagaaaagaaggaaaataggatgaaaaatctctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaat