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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGATTCAAGACCTTGAGAAGGTTTTTGAACCTTTGTTCTATTACTGGAAACGCAAGAGACAAACTAAGGAATCATTCGGCAACTTCACCAACCGCATGgtgagcacttaaaacattttaagaaattttgatctattcttccttggaaaatatatggaaaaattgatttttctatctcagatttctacctacaccttaa...

Basic information

species Vitis vinifera
transcript Vv06s0004g02330.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110371676|gb|EC935796.1|EC935796
EST:     AACGCAAGAGACAAACTAAGGAATCATTTGGCAACTTCACCAACCGCATG                         GGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
genomic: AACGCAAGAGACAAACTAAGGAATCATTCGGCAACTTCACCAACCGCATGgtgagcactt ... ttcttgtcagGGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
EST: gi|110417508|gb|EC983570.1|EC983570
EST:     ATCATTCGGCAACTTCACCAACCGCATG                         GGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
genomic: ATCATTCGGCAACTTCACCAACCGCATGgtgagcactt ... ttcttgtcagGGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
EST: gi|110380705|gb|EC945992.1|EC945992
EST:     AACGCAAGAGACAAACTAAGGAATCATTTGGCAACTTCACCAACCGCATG                         GGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
genomic: AACGCAAGAGACAAACTAAGGAATCATTCGGCAACTTCACCAACCGCATGgtgagcactt ... ttcttgtcagGGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
EST: gi|30329232|gb|CD012494.1|CD012494
EST:     AACGCAAGAGACAAACTAAGGAATCATTCGGCAACTTCACCAACCGCATG                         GGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
genomic: AACGCAAGAGACAAACTAAGGAATCATTCGGCAACTTCACCAACCGCATGgtgagcactt ... ttcttgtcagGGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
EST: gi|110381798|gb|EC935409.1|EC935409
EST:     AACGCAAGAGACAAAGTAAGGAATCATTCGGCAACTTCACCAACCGCATG                         GGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
genomic: AACGCAAGAGACAAACTAAGGAATCATTCGGCAACTTCACCAACCGCATGgtgagcactt ... ttcttgtcagGGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
EST: gi|30255100|gb|CB971547.1|CB971547
EST:     AACGCAAGAGACAAACTAAGGAATCATTTGGCAACTTCACCAACCGCATG                         GGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
genomic: AACGCAAGAGACAAACTAAGGAATCATTCGGCAACTTCACCAACCGCATGgtgagcactt ... ttcttgtcagGGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
EST: gi|30330127|gb|CD013389.1|CD013389
EST:     GGAATCATTCGGCAACTTCACCAACCGCATG                         GGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
genomic: GGAATCATTCGGCAACTTCACCAACCGCATGgtgagcactt ... ttcttgtcagGGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
EST: gi|30255485|gb|CB971617.1|CB971617
EST:     AACGCAAGAGACAAACTAAGGAATCATTTGGCAACTTCACCAACCGCATG                         GGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
genomic: AACGCAAGAGACAAACTAAGGAATCATTCGGCAACTTCACCAACCGCATGgtgagcactt ... ttcttgtcagGGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
EST: gi|45771526|gb|CN007378.1|CN007378
EST:     AACGCAAGAGACAAACTAAGGAATCATTTGGCAACTTCACCAACCGCATG                         GGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG
genomic: AACGCAAGAGACAAACTAAGGAATCATTCGGCAACTTCACCAACCGCATGgtgagcactt ... ttcttgtcagGGATTTGAGAAACTTCAAGAGTTGGTTGACAAATGGGAAGGTCCAGTGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAGATTCAAGACCTTGAGAAGGTTTTTGAACCTTTGTTCTATTACTGGAAACGCAAGAGACAAACTAAGGAATCATTCGGCAACTTCACCAACCGCATGgtgagcacttaaaacattttaagaaattttgatctattcttccttggaaaatatatggaaaaattgatttttctatctcagatttctacctacaccttaa

- - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaat