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TACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACTCTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATGgtgaggatttaactctattacagaaaacactctgacagcattcagcatatctcataatactatcatgatctaaaaatttatcactgctgaattgaaatcc...
species | Vitis vinifera |
transcript | Vv06s0004g02140.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATG GTTTGCTATTACTGATGAGGGTTATAGCTGTGACATTCTGTGTGACTCTAGEST: gi|294967324|gb|GW836678.1|GW836678
genomic: CTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATGgtgaggattt ... taaactccagGTTTGCTATTACTGATGAGGGTTATAGCTGTGACATTCTGTGTGACTCTAG
EST: CTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATG GTTTCCTATTATTGATGAGGGTTATAGCTGTGACATTCTGTGTGACTCTAGEST: gi|110698510|gb|EE076088.1|EE076088
genomic: CTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATGgtgaggattt ... taaactccagGTTTGCTATTACTGATGAGGGTTATAGCTGTGACATTCTGTGTGACTCTAG
EST: CTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATG GTTTGCTATTACTGATGAGGGTTATAGCTGTGACATTCTGTGTGACTCTAGEST: gi|33405457|gb|CF211084.1|CF211084
genomic: CTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATGgtgaggattt ... taaactccagGTTTGCTATTACTGATGAGGGTTATAGCTGTGACATTCTGTGTGACTCTAG
EST: CTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATG GTTTCCTATTACTGATGAGGGTTATAGCTGTGACATTCTGTGTGACTCTAGEST: gi|294965646|gb|GW837245.1|GW837245
genomic: CTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATGgtgaggattt ... taaactccagGTTTGCTATTACTGATGAGGGTTATAGCTGTGACATTCTGTGTGACTCTAG
EST: CTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATG GTTTGCTATTACTGATGAGGGTTATAGCTGTGACATTCTGTGTGACTCTAGEST: gi|30300493|gb|CB977287.1|CB977287
genomic: CTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATGgtgaggattt ... taaactccagGTTTGCTATTACTGATGAGGGTTATAGCTGTGACATTCTGTGTGACTCTAG
EST: CTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATG GTTTCCTATTACTGATGAGGGATATAGCEST: gi|30301245|gb|CB978039.1|CB978039
genomic: CTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATGgtgaggattt ... taaactccagGTTTGCTATTACTGATGAGGGTTATAGC
EST: CTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATG GTTTCCTATTACTGATGAGGGTTATAGCTGTGACATTCTGTGTGACTCTAG
genomic: CTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATGgtgaggattt ... taaactccagGTTTGCTATTACTGATGAGGGTTATAGCTGTGACATTCTGTGTGACTCTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACTCTTACCTCCAAGTACCAAAGTTCTGCGATTTGGTCGATTTCTGAAAAATGgtgaggatttaactctattacagaaaacactctgacagcattcagcatatctcataatactatcatgatctaaaaatttatcactgctgaattgaaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa