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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATGGAAGAGATAACTGCATTTATAAAAGGTGCCATCTGCAATGATCAATGTTTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAGgtagatctattggctgtaaataattaaataatgttgtgttatttcaaacaggcaataggttttttcttgatcttttcgctgcttaaatgagtattacttatttgtactcttcatccgctccaaactgcag

Basic information

species Vitis vinifera
transcript Vv06s0004g02050.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02050.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 5'ss of exon 6
GGAAATGGAAGAGATAACTGCATTTATAAAAGGTGCCATCTGCAATGATCAATGTTTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAGgtagatctattggctgtaaataattaaataatgttgtgttatttcaaacaggcaataggttttttcttgatcttttcgctgcttaaatgagtattacttatttgtactcttcatccgctccaaactgcag
 |||||||| |||||| |||||||| | || | ||| || ||||||||||||||| | ||||| ||||| || ||||||||||| || || ||||||||||||  |                    ||  ||  | |  | |  |  |         | |  |||  ||  ||||||  ||  | || |   |  | |  ||| |   | |  |    | ||| ||| ||
AGAAATGGAGGAGATATCTGCATTTGTGAAGGATGCAATTTGCAATGATCAATGTCTAGGACGCTGCCTTTATATTCATGGTGTACCAGGCACTGGCAAGgtaact--------------------aaccatcctttactgtcccctat--------gatggtttgatgtccttttctgtggctgaaggctaagcaatattttctgtgcctacttt--ttcaacctgtag

upper sequence: Vv06s0004g02050.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G41490.1 (Glycine max), 5'ss of exon 6
GGAAATGGAAGAGATAACTGCATTTATAAAAGGTGCCATCTGCAATGATCAATGTTTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAGgtagatctattggctgtaaataattaaataatgttgtgttatttcaaacaggcaataggttttttcttgatcttttcgctgcttaaatgagtattacttatttgtactcttcatccgctccaaactgcag
 |||||||| ||||||||| |||| || |||||||| || |  |||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||      || | | |       |   || ||||   ||| |  |   |   |||  |  |||     |  | ||   ||    ||  ||| || ||| || || || || || |    | ||||||||
AGAAATGGAGGAGATAACTACATTCATCAAAGGTGCTATTTCTAATGATCAATGTCTGGGGCGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGgtatcctcgtttgatct-------tctgtattgtttctttagtctac-tatctaatgaggcttt----aacttctttcatg---gaacaagtcttgcttcttagtcctttt-attcatgtctaactgcag

upper sequence: Vv06s0004g02050.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G03900.1 (Glycine max), 5'ss of exon 8
GGAAATGGAAGAGATAACTGCATTTATAAAAGGTGCCATCTGCAATGATCAATGTTTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAGgtagatctattggctgtaaataattaaataatgttgtgttatttcaa-acaggcaataggttttttcttgatcttttcgctgcttaaatgagtattacttatttgtactcttcatccgctccaaactgcag
 |||||||| |||||||||||||| || || |||||  | |   |  |||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||      | || ||   ||  ||  ||| ||||   ||| |  |  | |  ||||  |  |||     | ||| |  |   |  ||  | | || ||| || || || || || |    | ||||||||
AGAAATGGAGGAGATAACTGCATTCATCAATGGTGCTCTTTCTGACAATCAATGTCTGGGACGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGgta---tcctcggttg---atc-ttctatattgtttctttagtctactatatccaatgaggcttt-----aacttctatca--tagaacaaatcttgcttcttagtcctttt-attcatgtctaactgcag