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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATCATATCTGTTGAATCGGCCAGTGAAACTCACATTAGATAGAGACATAGACATGATGATATCTGGGCAGCGCCATACCTTTCTTGGAAAGTACAAGgtgacattttctttacttgaattttttcatggtaatatccttagcagcttgatgtttcttttttcaggttttctgttgaatgttttgggatgaaataatcatgaaacaatgttacttgatgtag

Basic information

species Vitis vinifera
transcript Vv06s0004g02030.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G41520.1 (Glycine max), 5'ss of exon 8
TCCATCATATCTGTTGAATCGGCCAGTGAAACTCACATTAGATAGAGACATAGACATGATGATATCTGGGCAGCGCCATACCTTTCTTGGAAAGTACAAGgtgacattttctttacttgaattttttca--tggtaatatccttagcagcttgatgtttcttttttcaggttt-tctgttgaatgttttgggatgaaataatcatgaaacaatgttacttgatgtag
|||||| |||||||| ||||| ||||||||| ||||| | ||  ||||  |||||||||||||| ||||||| |||||||  ||||| || |||||||||||     |    ||| ||   |   || |  ||||  | | |||   |  |  |  |||  || |  |  |   |    ||||| |||||   |   | |                           
TCCATCTTATCTGTTAAATCGACCAGTGAAAATCACACTGGACCGAGATGTAGACATGATGATAACTGGGCAACGCCATAGTTTTCTAGGGAAGTACAAGgtatggctacagttatttacttacatttaactggtgcttttctttataaatcaacattttattgtaaaactaaataccgtgaattttttgtattcttaaa---------------------------

upper sequence: Vv06s0004g02030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G03870.1 (Glycine max), 5'ss of exon 7
TCCATCATATCTGTTGAATCGGCCAGTGAAACTCACATTAGATAGAGACATAGACATGATGATATCTGGGCAGCGCCATACCTTTCTTGGAAAGTACAAGgtgacattttctttacttgaattttttca--tggtaatatccttagcagcttgatgtttcttttttcaggttttctgttgaatgttttgggatgaaataatcatgaaacaatgttacttgatgtag
|||||| |||||||| ||||| ||||||||| ||||| | ||  ||||  | |||||||||||| |||||||||| ||||  ||||| || |||||||||||     |    ||| ||   |   || |  ||||  | | |||   |  |  |  |||  || |  |          | |||  | ||  ||     |||  | |||                  
TCCATCTTATCTGTTAAATCGACCAGTGAAAATCACACTGGACCGAGATGTGGACATGATGATAACTGGGCAGCGGCATAGTTTTCTAGGGAAGTACAAGgtatggctacagttatttacttacctttaactggtgtttttctttatacatcaacattttattgtaaaa--------ctaaatactgtgaaatttttgaattcttaaa------------------

upper sequence: Vv06s0004g02030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G34890.1 (Arabidopsis thaliana), 5'ss of exon 7
TCCATCATATCTGTTGAATCGGCCAGTGAAACTCACATTAGATAGAGACATAGACATGATGATATCTGGGCAGCGCCATACCTTTCTTGGAAAGTACAAGgtga---cattttctttacttgaattttttcatggtaatatccttagcagcttgatgtttcttttttcaggttttctgttgaatgttttgggatgaaataatcatgaaacaatgttacttgatgtag---------------
||| || || || |||||||| || |||||||||| | | ||  ||||  | |||||||||||| |||| || || ||||  ||||||||||||||||||||     || ||  ||  |  ||||||||     || |       |   |   ||      | |    ||         ||    |     | |  |  ||  |   ||     ||  ||  |||                 
TCCTTCCTACCTATTGAATCGACCTGTGAAACTCATACTGGACCGAGATGTGGACATGATGATAACTGGTCATCGTCATAGTTTTCTTGGAAAGTACAAGgtatttccagttatttccccggaatttttaggcagtgagcaatgaaatggaaagaaacggttgtcagtagaagaaacagtgggaatagattgttagacaaactaaacaattcctttttttattgtgttctgctatcttaaag