Sequence
atgc intronic sequence ATGC exonic sequenceGTCAGATCCAAAGAGGTTGGCAAGCACACTTCAGCGGGAGAATGAAGAATCATGCACAACTTATAACATGCTAAAGgtgaatattcttaagtgctttaggaagggcatgtagacacagttttgattgttttgtggaagattatttttggattcaatgcacggataaatgcgttgaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G05980.1 (Glycine max), 5'ss of exon 7
GTCAGATCCAAAGAGGTTGGCAAGCACACTTCAGCG----GGAGAATGAAGAATCATGCACAACTTATAACATGCTAAAGgtg-------------aatattct-taagtgctttaggaagggcatgtagacacagttttgattgttttgtggaagattatttttggattcaatgcacggataaatgcgttgaa---------------------------------------------------------------
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GAGTGATCCAAAGAGAATAGCAGACA-ACTTAAGAACGACAGAGAATGAAGAATCATGCACAACTTATAATATGTTGAAGgtacaaccaatcattcatcattttattagctctttaggtaata-atgcttaggaagttaaaaatgtgt-acatgaattttttttaatagttagaagagagaaaactgattatcacatggtaattcatcgctccatgttcttcatttgtcttagcacacaaaaataaaatgatttcag
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G14000.1 (Glycine max), 5'ss of exon 8
GTCAGATCCAAAGAGGTTGGCAAGCACACTTCA---GCGGGAGAATGAAGAATCATGCACAACTTATAACATGCTAAAGgtgaa--tattcttaagtgctttaggaagggcat-gtagacacagttttgattgttttgtggaagattatttttggattcaatgcacggataaatgcgttgaa
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-------------AGAATGGCAGATACCTTAAAAACGACAGAGAATGAAGAATCATGCACAACTTATAATATGTTGAAGgtacagccaatcattcataattttattagttcatcatgaataatgcttaaaaatgtgtataagaaattttttcatagttatttgaactgtcaaaagagag---
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G14020.1 (Glycine max), 5'ss of exon 7
GTCAGATCCAAAGAGGTTGGCAAGCACACTTCAGCG----GGAGAATGAAGAATCATGCACAACTTATAACATGCTAAAGgtgaatattcttaagtgctttaggaagggcatgt-agacacagttttgattgttttgtggaagattatttttggattcaatgcacggataaatgcgttgaa---
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GAGTGATCCAAAGAGAATAGCAGACA-ACTTAAGAACGACAGAGAATGAAGAATCATGCACAACTTATAATATGTTGAAGgtacaaccagttattcgtcattttattagctcgtcatgtaatgcttaggaagtt----aaaaatgtgtatatgaagttttttcataaatattttaactgtcagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71855680|gb|DT004735.1|DT004735EST: CATGCACAACTTATAACATGCTAAAG GTTTCGCGCCACCTCTTTAGATGGACCAAAGAAGTGGTATATGCAGATTAT
genomic: CATGCACAACTTATAACATGCTAAAGgtgaatattc ... gattttgtagGTTTCGCGCCACCTCTTTAGATGGACCAAAGAAGTGGTATATGCAGATTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAGATCCAAAGAGGTTGGCAAGCACACTTCAGCGGGAGAATGAAGAATCATGCACAACTTATAACATGCTAAAGgtgaatattcttaagtgctttaggaagggcatgtagacacagttttgattgttttgtggaagattatttttggattcaatgcacggataaatgcgttgaa
- - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggataaa