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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTGGCCGAATCCGTGAAACAGGATTTTGGCAGCATCGATATCCTTGTGCACTCACTTGCCAATGGGCCGGAGgtactgttttgctggttgtgatcttatcagttgaccattcattttggtactttacaagtaaacatctcttaaatag

Basic information

species Vitis vinifera
transcript Vv06s0004g01310.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 7
GAAGTGGCCGAATCCGTGAAACAGGATTTTGGCAGCATCGATATCCTTGTGCACTCACTTGCCAATGGGCCGGAGgtactgttttgctggttgtgatcttatcagttgaccattcattttggtac------tttacaagtaaacatctcttaaatag
||||| || ||||| || ||| | || ||||||||||| ||||||||||||||||||||||||||||| || |||||||  |        |  | | | |   ||||      | | |||||||       || | ||  |   | |||| | ||||
GAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaattcattaataagcattgaagttcttttatgaatttggtatatgactttaataaaaagtaaactctgatatag

upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G03060.1 (Glycine max), 5'ss of exon 8
GAAGTGGCCGAATCCGTGAAACAGGATTTTGGCAGCATCGATATCCTTGTGCACTCACTTGCCAATGGGCCGGAGgtactgt---tttgctggttgtgatcttatcagttgaccattcattttggtac------tttacaagtaaacatctcttaaatag
||||| || ||||| || ||  | || |||||||| || ||||||||||||||||||||||||||||| || |||||||  |   |    |  |  | | | |   ||||      |   |||||||       || | ||| |   | |||| |  |||
GAAGTTGCTGAATCTGTTAAGGAAGACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacgataaatacattaataataagcattgaagttcctttatgcatttggtatctggttttaataagaatttaactctgatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77583292|gb|DV220679.1|DV220679
EST:     ATTTTGGCAGCATTGATATCCTTGTGCACTCACTTGCCAATGGGCCGGAG                         GTGACCAAGCCTCTGTTGGAGACATCCAGAAAAGGCTATCTTGCGGCAATA
genomic: ATTTTGGCAGCATCGATATCCTTGTGCACTCACTTGCCAATGGGCCGGAGgtactgtttt ... tcttaaatagGTGACCAAGCCTCTGTTGGAGACATCCAGAAAAGGTTATCTTGCGGCAATA