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TGGATCTTTTGTAATAGCTCATTCTTTGGCAGAGTCCCAAAAGGCAGTAACTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCTgtaagtttgaacttttccttgagtggaaaatgatatagtttaaatgatctaattacttgacaagcagtggcactcagatgcttattagttttattatatt...
species | Vitis vinifera |
transcript | Vv05s0077g00690.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCT ATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAGEST: gi|110720147|gb|EE095816.1|EE095816
genomic: CTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCTgtaagtttga ... acttctgcagATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAG
EST: CTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCT ATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAGEST: gi|33406611|gb|CF212238.1|CF212238
genomic: CTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCTgtaagtttga ... acttctgcagATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAG
EST: CTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCT ATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAGEST: gi|110392261|gb|EC957554.1|EC957554
genomic: CTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCTgtaagtttga ... acttctgcagATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAG
EST: CGGGTTGTTGAATGTCGGCTAGCTGCT ATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAGEST: gi|110719299|gb|EE097116.1|EE097116
genomic: CGGGTTGTTGAATGTCGGCTAGCTGCTgtaagtttga ... acttctgcagATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAG
EST: CTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCT ATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAGEST: gi|30299334|gb|CB976128.1|CB976128
genomic: CTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCTgtaagtttga ... acttctgcagATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAG
EST: CTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCT ATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAGEST: gi|294964251|gb|GW838054.1|GW838054
genomic: CTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCTgtaagtttga ... acttctgcagATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAG
EST: CCGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCT ATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAGEST: gi|110732746|gb|EE108300.1|EE108300
genomic: CTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCTgtaagtttga ... acttctgcagATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAG
EST: CTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCT ATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAG
genomic: CTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCTgtaagtttga ... acttctgcagATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATCTTTTGTAATAGCTCATTCTTTGGCAGAGTCCCAAAAGGCAGTAACTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCTgtaagtttgaacttttccttgagtggaaaatgatatagtttaaatgatctaattacttgacaagcagtggcactcagatgcttattagttttattatatt
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaaaa