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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCTGGCGATCAGGGTATATCATCATGGGGTTGGAATTTGAGTGGTCAGCATTCTACTTATCATGCTCTCTTTCCAAGGGCCTGGACAATATATGATGgtattattttattttatcctttctattacacagatatatgaacattttcctggtattttcatttgaaagtacaattctaatttgcag

Basic information

species Vitis vinifera
transcript Vv05s0051g00910.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os10g33420.1 (Oryza sativa), 5'ss of exon 7
AAATCTGGCGATCAGGGTATATCATCATGGGGTTGGAATTTGAGTGGTCAGCATTCTACTTATCATGCTCTCTTTCCAAGGGCCTGGACAATATATGATGgtattattttattt----------tatcctttctattacacagatatatgaacattttcctggtattttcatttgaaagtacaattctaatttgcag-------
|||| |   ||    || || || |||||||  ||||| ||||| ||||| |||||||| ||||||||| | ||||| ||||| |||||  | |||||||||||    | ||             ||   ||  ||           |  |||| ||  ||    |||  |     |  |  |  |    | |||         
AAATGTAATGACTCTGGAATTTCTTCATGGGACTGGAACTTGAGCGGTCAACATTCTACCTATCATGCTTTATTTCCTAGGGCATGGACTGTTTATGATGgtatgccatcatggagctgtggaacattgcttgcatcttgtgatggcacaaacacttctct----tttctaccaagagatggatatgctttatgccaagccagc

upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G33990.1 (Glycine max), 5'ss of exon 7
AAATCTGGCGATCAGGGTATATCATCATGGGGTTGGAATTTGAGTGGTCAGCATTCTACTTATCATGCTCTCTTTCCAAGGGCCTGGACAATATATGATGgtattat--tttatttta-tcctttctattacacagatatatgaacattttcctggtattttcatttgaaagtacaattctaatttgcag
||| |||  |||||||| ||||||||||||||||||||| | ||||| ||||| || || || || ||| | |||||||| || |||||| | |||||||||||  |  |||||  || | ||| || |   | |  | ||||| |||| |    | ||| |  ||| | |||    |||| |||  |||
AAACCTGATGATCAGGGCATATCATCATGGGGTTGGAATCTAAGTGGCCAGCACTCAACCTACCACGCTTTGTTTCCAAGAGCTTGGACAGTTTATGATGgtatcttcatttatagtagttcttcctttgctaaatgtgtatgatcattat----gaattattgtttaatagttgttttcttattctcag

upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G33610.1 (Glycine max), 5'ss of exon 8
AAATCTGGCGATCAGGGTATATCATCATGGGGTTGGAATTTGAGTGGTCAGCATTCTACTTATCATGCTCTCTTTCCAAGGGCCTGGACAATATATGATGgtattat--tttattttatcctttctattac-acagatatatgaacattttcctggtattttcatttgaaagtacaattctaatttgcag
||| |||  |||||||| |||||||| ||||| |||||| | ||||| ||||| || || || |||||| | |||||||| || |||||| | |||||||||||  |  ||||| |||    |||  || | | |  | ||||| |||| |    | ||| |  ||| | ||     |||| |||| |||
AAACCTGATGATCAGGGCATATCATCGTGGGGATGGAATCTAAGTGGCCAGCACTCAACCTACCATGCTTTGTTTCCAAGAGCTTGGACAGTTTATGATGgtatcttcatttatgttagttcttcgtttgctaaatttctatgatcattat----gaattattgtttaatagctgttttcttattttcag

upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G24180.2 (Arabidopsis thaliana), 5'ss of exon 9
AAATCTGGCGATCAGGGTATATCATCATGGGGTTGGAATTTGAGTGGTCAGCATTCTACTTATCATGCTCTCTTTCCAAGGGCCTGGACAATATATGATGgtattattttattttatcctttctattacacagatatatgaacattttcctggtattttcatttgaaagtacaattctaatttgcag
|| ||  | ||| | ||| | || |||||||| |||||| ||| ||| |||||||| |||||||||||||| |||||  |||| ||||| |||||||||||||  |   |     |     ||  ||| |  | ||   | | ||||   | |   | ||  ||| ||  |   ||||  |||  ||
AAGTCGCGTGATAAAGGTCTTTCTTCATGGGGCTGGAATCTGAATGGCCAGCATTCAACTTATCATGCTCTATTTCCTCGGGCTTGGACTATATATGATGgtacgaccctgcaggaattcgtcatttaaa--gcta---gcatatttctgtcggtgtatctcttgtaacgattcttctg-tttctag