Sequence
atgc intronic sequence ATGC exonic sequenceTATCTATTGGCATTGTAACTGCCATTGCTGCCCCTGCAAGTATCAAAGTGGATTTTGAAGGCAATGGAGGCCATGCGGGTGCTGTCTTGATGCCAAATAGgtgatgattttctagatgcctaggcaaacaccactccgtgctcctgtaaaaaaatgtcaactcttgatgcatagttcctccatcataagttctttttttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os12g40550.1 (Oryza sativa), 5'ss of exon 7
TATCTATTGGCATTGTAACTGCCATTGCTGCCCCTGCAAGTATCAAAGTGGATTTTGAAGGCAATGGAGGCCATGCGGGTGCTGTCTTGATGCCAAATAGgtgatgattttc-tagatgcctaggcaaacaccactccgtgctcctgtaaaaaaatgtcaactcttgatgcatagttcctccatcataagttctttttttg-
| |||||| |||| ||||| |||||||| ||||||||||| || ||||| |||||||| ||||| |||||||| || || || | ||||| |||| | |||| | | || | | | | | | | | || ||| | | || |||| || | | | ||||||
TCAAAATTGGCGTTGTCACTGCTATTGCTGCTCCTGCAAGTATTAAGGTGGAGTTTGAAGGGAATGGGGGCCATGCTGGAGCAGTGCTCATGCCTGCAAGgttagcatttccattcattcttcatccatgtggtttacattattttg---aaaggtccccacc------acatatttacatgggtaaagaaactttttacag
upper sequence: Vv05s0020g04900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G130034_T01 (Zea mays), 5'ss of exon 7
TATCTATTGGCATTGTAACTGCCATTGCTGCCCCTGCAAGTATCAAAGTGGATTTTGAAGGCAATGGAGGCCATGCGGGTGCTGTCTTGATGCCAAATAGgtgatgattttctagatgcctaggcaaacaccactccgtgctcctgtaaaaaaatgtc--aactcttgatgcatagttcctccatcataagttctttttttg
| ||||||||||||| ||||| |||||||| ||||||||| | || ||||| |||||||| ||||| || ||||| || || || ||||||| |||| | || |||| | | | | | ||| || | | || | || ||| | | | | |
TCCCTATTGGCATTGTTACTGCAATTGCTGCTCCTGCAAGTCTTAAGGTGGACTTTGAAGGGAATGGCGGTCATGCTGGAGCAGTGCTGATGCCTGCAAGgttagcatattct-----ttcatttttattgcgatttacatttgtgtgaaggatctccacaaatatttatgtagaaggagtgttctacag------------
upper sequence: Vv05s0020g04900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G34790.1 (Glycine max), 5'ss of exon 7
TATCTATTGGCATTGTAACTGCCATTGCTGCCCCTGCAAGTATCAAAGTGGATTTTGAAGGCAATGGAGGCCATGCGGGTGCTGTCTTGATGCCAAATAGgtgatgattttctagatgcctaggcaaacaccactccgtgctcctgtaaaaaaatgtcaactcttgatgca-tagttcctccatcataagttctttttttg-
||||||| ||||| || ||||||||||| || || |||||| | | ||| || |||||||||||||| |||||||||||||||||| | ||||| || ||||| ||| | | | | || ||| | | | | ||| || ||| |||| || | | | || | ||
TATCTATAGGCATAGTCACTGCCATTGCAGCTCCAGCAAGTCTAACAGTTGAATTTGAAGGCAATGGTGGCCATGCGGGTGCTGTCCTTATGCCTAACAGgtgtctgccatcttaaaacagatattattctttttcagtgttacaccattatcctgtt--ctattgttgcagtaacttgaactgtaacagccagatattcct
upper sequence: Vv05s0020g04900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G32850.2 (Glycine max), 5'ss of exon 6
TATCTATTGGCATTGTAACTGCCATTGCTGCCCCTGCAAGTATCAAAGTGGATTTTGAAGGCAATGGAGGCCATGCGGGTGCTGTCTTGATGCCAAATAGgtgatgattttctagatgcctaggcaaacaccactccgtgctcctgtaaaaaaatgtcaactcttgatgca-tagttc---ctccatcataagttctttttttg
||||||| ||||| || ||||||||||| || || |||||| | | || || |||||||||||||| |||||||||||||||| | | ||||| || ||||| ||| | | | | || ||||| | | ||| || ||| |||| || || || | || | || ||
TATCTATAGGCATAGTTACTGCCATTGCAGCTCCAGCAAGTCTAACGGTTGAATTTGAAGGCAATGGTGGCCATGCGGGTGCTGCCCTTATGCCTAACAGgtggctgccatcttaaaacagatattattctttttcagtgctacacccttatcctgtt--ctattgttgcagtaatttgaactgtaacacctggatattctt--
upper sequence: Vv05s0020g04900.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G43600.1 (Arabidopsis thaliana), 5'ss of exon 7
TATCTATTGGCATTGTAACTGCCATTGCTGCCCCTGCAAGTATCAAAGTGGATTTTGAAGGCAATGGAGGCCATGCGGGTGCTGTCTTGATGCCAAATAGgtgatgattttctagatgcctaggcaaacaccactccgtgctcctgtaaaaaaatgtcaactcttgatgcatagttcctccatcataagttctttttttg
|| ||| || ||||||| ||||||||||| || |||||| | || ||||| ||||||||||||||||| ||||| |||||||| | |||||| |||||||| | | | || || | | | | | | | || | | || ||| | || || ||
TAGATATCGGTGTTGTAACCGCCATTGCTGCTCCAGCAAGTTTGAAGGTGGAATTTGAAGGCAATGGAGGTCATGCTGGTGCTGTACTTATGCCATATAGgtga-gctatattatgcaactgaaccatc--tgtttaaccactaggcactagtatactga---tcactgtataatgactatttcttag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110377763|gb|EC942850.1|EC942850EST: ATGCGGGTGCTGTCTTGATGCCAAATAG AAATGATGCAGGATTGGCAGCTGCAGAGTTAGCACTAGCTGTTGAGAAACA
genomic: ATGCGGGTGCTGTCTTGATGCCAAATAGgtgatgattt ... attggagcagAAATGATGCAGGATTGGCAGCTGCAGAGTTAGCACTAGCTGTTGAGAAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATCTATTGGCATTGTAACTGCCATTGCTGCCCCTGCAAGTATCAAAGTGGATTTTGAAGGCAATGGAGGCCATGCGGGTGCTGTCTTGATGCCAAATAGgtgatgattttctagatgcctaggcaaacaccactccgtgctcctgtaaaaaaatgtcaactcttgatgcatagttcctccatcataagttctttttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc