1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTCTGTATAATCATATTTCAGCTCTGCAAAGAAATGTGGAGAAGCTAAGATCTGAAATTgtacgagctctatcatattttaacttttagtattctttgactcagctgagttgaaagacagcagagtttaaaaaatactgcctcattttttaaattgtcactcatgttattttcttatgtctcgcaatgatag
species | Vitis vinifera |
transcript | Vv05s0020g04770.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGAAATGTGGAGAAGCTAAGATCTGAAATT GAGCAAATGGACATTGTGAAAGACCATGGAGATGAGGAGCTGTATGACAAAEST: gi|110700202|gb|EE077974.1|EE077974
genomic: AGAAATGTGGAGAAGCTAAGATCTGAAATTgtacgagctc ... gcaatgatagGAGCAAATGGACATTGTGAAAGACCATGGAGATGAGGAGCTGTATGACAAA
EST: ATCATATTTCAGCTCTGCAAAGAAATGTGGAGAAGCTAAGATCTGAAATT GAGCAAATGGACATTGTGAAAGACCATGGAGATGAGGAGCTGTATGACAAAEST: gi|110419463|gb|EC985692.1|EC985692
genomic: ATCATATTTCAGCTCTGCAAAGAAATGTGGAGAAGCTAAGATCTGAAATTgtacgagctc ... gcaatgatagGAGCAAATGGACATTGTGAAAGACCATGGAGATGAGGAGCTGTATGACAAA
EST: ATCATATTTCAGCTCTGCAAAGAAATGTGGAGAAGCTAAGATCTGAAATT GAGCAAATGGACATTGTGAAAGACCATGGAGATGAGGAGCTGTATGACAAAEST: gi|110728229|gb|EE103616.1|EE103616
genomic: ATCATATTTCAGCTCTGCAAAGAAATGTGGAGAAGCTAAGATCTGAAATTgtacgagctc ... gcaatgatagGAGCAAATGGACATTGTGAAAGACCATGGAGATGAGGAGCTGTATGACAAA
EST: ATCATATTTCAGCTCTGCAAAGAAATGTGGAGAAGCTAAGATCTGAAATT GAGCAAATGGACANTTGTGAA-GACCATGGAGATGAGGAGCTGTATGACAA
genomic: ATCATATTTCAGCTCTGCAAAGAAATGTGGAGAAGCTAAGATCTGAAATTgtacgagctc ... gcaatgatagGAGCAAATGGACA-TTGTGAAAGACCATGGAGATGAGGAGCTGTATGACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTGTATAATCATATTTCAGCTCTGCAAAGAAATGTGGAGAAGCTAAGATCTGAAATTgtacgagctctatcatattttaacttttagtattctttgactcagctgagttgaaagacagcagagtttaaaaaatactgcctcattttttaaattgtcactcatgttattttcttatgtctcgcaatgatag
- - - - - - - - - TCAGCT
- - - - - - - - - CAGCTC
- - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - AGAAGC