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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGAgtaagctcttgaaaagagaagcttttactaaagtttataggtatgttcatttacctccttatgaccatcatttggacag

Basic information

species Vitis vinifera
transcript Vv05s0020g04630.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 7
CAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGAgtaagctcttgaaaagagaagcttttactaaagtttataggtatgttcatttacctccttatgaccatcatttggacag
|||  ||||| | |||  ||||||||||||||| ||||||| |||||||| |||||||||||||| || ||  | ||||| ||||| |||||||| || ||||  ||| |||     |||| || | |||    |||   | ||| |||     |  || |||   || |    ||||
CAAGCAACACGTGTTGAGCGTGTTATTGGCTTTCTTCTTGCAATATGGGGTATATTGTTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGGgtaaaatct-gaattattaagcattcattaagcaatattt-tctgtgcatgccattaattttga--gtcttcacaacag

upper sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G32300.1 (Glycine max), 5'ss of exon 7
CAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGAgtaagctcttgaaaagagaagcttttactaaagtttataggtatgttcat-ttacctccttatgaccatcatttggacag
|||| ||||| | |||  ||| ||||||| ||| ||||||| |||||||| |||||||||||| | || ||  | ||||| ||||| |||||||| || ||||  ||| |||     |||| || | |||    | |   | ||| |||   |     || |   | |||     ||||
CAAACAACACGTGTTGAGCGTTTTATTGGTTTTCTTCTTGCAATATGGGGTATATTGTTTTACACTCGACTTCTAAGTACGATGACCGAACAATTTAGGgtaaaatct-gaagtattaagcattcattaagcaatcttt-tctgtgcatgccattaatttttagtcttcac---aacag

upper sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G43745.1 (Arabidopsis thaliana), 5'ss of exon 7
CAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGAgtaagctcttgaaaagagaagcttttactaaagtttataggtatgttcatttacctccttatgaccatcatttggacag
||||  ||||  |||| | | || ||||| ||||| || || || ||||| |||||||||||||| || ||||| || |||||||||||||||||  | ||||| |||||| |  |  | ||  |  | ||   |  | ||   ||  |  |  | | |     | |  | ||| |||
CAAAAGACACGCATTGAAAGAGTCATTGGATTTGTCCTAGCCATTTGGGGAATATTGTTTTACTCTCGGCTATTAAGCACAATGACAGAACAATTTCGGgtaagttcttgagataaaca-ctactggtgaaaaatgaatgttaattggtacaagttcctgatcgctttgtctgggcag