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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATCGTGTGGATATTGAGGGGAATGCACACAGTGGTCCACTTGTGAGATTACCTTTTGCTTCGTTGTTTGACACTCTTGGCATgtgagtctctctttttctatcacatagttaaagattaggcttattaatttaggttgtatgttctgaggctatcctgatttatttatttttttctcgtttt...

Basic information

species Vitis vinifera
transcript Vv05s0020g04100.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G23730.1 (Glycine max), 5'ss of exon 4
TTGATCGTGTGGATATTGAGGGGAATGCACACAGTGGTCCACTTGTGAGATTACCTTTTGCTTCGTTGTTTGACACTCTTGGCATgtgagtctctctttttctat-cacatagttaaagattaggcttattaatttaggttgtatgttctgaggctatcctgatttatttatttttttctcgtttt-
| ||| |||| ||| | ||||| |||||||||||||  | |||||| | ||| ||||||||  |||||||||| || |||||||||||||| ||    |  || |     | ||| |  |||    |  |  || |       |  | ||   | |    |  || | ||||  | |||    |   
TGGATTGTGTAGATTTAGAGGGTAATGCACACAGTGACCAACTTGTAAAATTGCCTTTTGCACCGTTGTTTGATACCCTTGGCATgtgagtatcaggctacctgtatgtgtggttgacaattgacttactggatctgtagcaaacttacttttgtt--tatagttgagttatgctattcaaaataga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352769603|gb|FQ468531.1|FQ468531
EST:     GGTCCACTTGTGAGATTACCTTTTGCTTCGTTGTTTGACACTCTTGGCAT                         GTTCTTGGCTG
genomic: GGTCCACTTGTGAGATTACCTTTTGCTTCGTTGTTTGACACTCTTGGCATgtgagtctct ... acttgctcagGTTCTTGGCTG
EST: gi|352780977|gb|FQ466290.1|FQ466290
EST:     GGTCCACTTGTGAGATTACCTTTTGCTTCGTTGTTTGACACTCTTGGCAT                         GTTCTTGGCTGATGAGACTGCCATCCTACTGCTTTACTCACTGGTGCATGG
genomic: GGTCCACTTGTGAGATTACCTTTTGCTTCGTTGTTTGACACTCTTGGCATgtgagtctct ... acttgctcagGTTCTTGGCTGATGAGACTGCCATCCTACTGCTTTACTCACTGGTGCATGG
EST: gi|161714238|gb|FC064147.1|FC064147
EST:     GGTCCACTCGTGAGATTACCTTTTGCTTCGTTGTTTGACACTCTTGGCAT                         GTTCTTGGGTGATGAGACTGCCATCCTACTGCTTTACTCACTGGTGCATGG
genomic: GGTCCACTTGTGAGATTACCTTTTGCTTCGTTGTTTGACACTCTTGGCATgtgagtctct ... acttgctcagGTTCTTGGCTGATGAGACTGCCATCCTACTGCTTTACTCACTGGTGCATGG