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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCGTGGAGAACAAAGGTGTAACTGGGCCCCATTTGATTGTGGCTCCAAAGGCTGTGTTACCAAATTGGGTAAATGAATTCTCAACATGGGCTCCTAGgtacacactcagctttgtttgaaataaaacatctctctctctctctctctctctctctctctgtatatatatatatatatatatatatatatcctctgcatgtgttttgaataacttacaggttgtcttcctgatccag

Basic information

species Vitis vinifera
transcript Vv05s0020g02960.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os05g05230.1 (Oryza sativa), 5'ss of exon 7
ATCTCGTGGAGAACAAAGGTGTAACTGGGCCCCATTTGATTGTGGCTCCAAAGGCTGTGTTACCAAATTGGGTAAATGAATTCTCAACATGGGCTCCTAGgtacacactcagctttgtttgaaataaaacatctctctctctctctctctctctctctctctgtatatatatatatatatatatatatatatcctctgcatgtgttttgaataacttacaggttgtcttcctgatccag
||||  ||||||| || |  || || || || || || ||  | || |||||||| |||||||||||||||   |||||||||  ||| |||||||||||||||    |||           |  | ||||||| | | | | ||  |    |  | | ||    ||   | |   ||    |||  | | |  | ||||                                       
ATCTATTGGAGAAGAAGGAGGTTACAGGACCACACTTAATAATAGCACCAAAGGCCGTGTTACCAAATTGGTCTAATGAATTCAAAACTTGGGCTCCTAGgtactt-ttcattgggaggatgatcataacatctgtgtatatttccattctacattgtatcaaagtacccaaactgat---catacttttgtgttttgcag--------------------------------------

upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G28120.1 (Glycine max), 5'ss of exon 8
ATCTCGTGGAGAACAAAGGTGTAACTGGGCCCCATTTGATTGTGGCTCCAAAGGCTGTGTTACCAAATTGGGTAAATGAATTCTCAACATGGGCTCCTAGgtacacactcagctttgtttgaaataaaacatctctctctctctctctctctctctctctctgtatatatatatatatata---tatatatatatcctctgcatgtgttttgaataacttacaggttgtcttcctgatccag
||||  ||||  |||| ||||| ||||| ||||| |||||||| ||||||||||||||| | ||||||||||| ||||||||| |||||||||||||||||||  | |  |||     |||   ||||  || |      ||   ||  |            | |||||  | | | | |    | |  | ||    | ||| | |  |||  | ||| ||    || |||| ||||| |||
ATCTTATGGAACACAAGGGTGTTACTGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTGCTGCCAAATTGGGTCAATGAATTCACAACATGGGCTCCTAGgtatgcccaaagcagacattg---taaattattttgtctccttcttcctttgtggggagaggggatataattctgtttgtgaactctgcacatcatatttgcttttaattttca-aacatattccttttctttctgattcag

upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G39630.1 (Glycine max), 5'ss of exon 5
ATCTCGTGGAGAACAAAGGTGTAACTGGGCCCCATTTGATTGTGGCTCCAAAGGCTGTGTTACCAAATTGGGTAAATGAATTCTCAACATGGGCTCCTAGgtacacactcagctttgtttgaaataaaacatctctctctctctctctctctctctctctctgt---------atatatatatatatatatat-atatatatcctctgcatgt----gttttgaataacttacaggttgtcttcctgatccag
||||  ||||  |||| ||||| ||||| || || |||||||| ||||||||||||||  ||||||||||||| ||||||||| |||||||||||||||||||     ||| || ||    ||  | |   | |   |   |   ||||  |||  |  | ||          |||||  | | | | |  || ||  | ||| | | ||  |     |||  ||| ||  |    || |||| ||||| |||
ATCTTATGGAACACAAGGGTGTTACTGGTCCTCACTTGATTGTTGCTCCAAAGGCTGTTCTACCAAATTGGGTCAATGAATTCACAACATGGGCTCCTAGgtatg---tca-ctatgcccaaagcagacattttaaattgtttcgtctccttcttcccttgtggggagaggggatataattctttttgtgaattatgcacatcatattcacttttaattttcaaatcacacatgccttttctttctgattcag

upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G00640.1 (Glycine max), 5'ss of exon 8
ATCTCGTGGAGAACAAAGGTGTAACTGGGCCCCATTTGATTGTGGCTCCAAAGGCTGTGTTACCAAATTGGGTAAATGAATTCTCAACATGGGCTCCTAGgtacacactcagctttgtttgaaataaaacatctctctctctctctctctctctctctctctgtatatatatatatatatatatatatatatcctctgcatgtgttttgaataacttacaggttgtcttcctgatccag
||||  ||||  |||| ||||| ||||| || || |||||||||||||||||||||||  | ||||||||| | |||||||||||||||||||||||||||||    |   || |    ||||| | ||  ||           || ||    ||  |      |     | | ||   ||  | |  | ||| | | |||   |||  ||| ||||     || |||| ||||| |||
ATCTTATGGAACACAAGGGTGTGACTGGTCCTCACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAATGAATTCTCAACATGGGCTCCTAGgtatgtccgtggcatacactgaaaaataatttc-----------ctatcctgttcggtggggagagggtgacaaattcttagttcttcacatcttattcat---tttcaaatcacttgtgaattttctttctgattcag

upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G06010.1 (Arabidopsis thaliana), 5'ss of exon 7
ATCTCGTGGAGAACAAAGGTGTAACTGGGCCCCATTTGATTGTGGCTCCAAAGGCTGTGTTACCAAATTGGGTAAATGAATTCTCAACATGGGCTCCTAGgtacacactcagctttgtttgaaataaaacatctctctctctctctctctctctctctctctgtatatatatatatatatatatatatatatcctctgcatgtgttttgaataacttacaggttgtcttcctgatccag
||||  ||||||| ||||||||  |||||||  || | || || |||||||| |||||| |||||||||||||||| || ||  |||||||||  || |||||            ||||  ||| || |  |||||   |         |  | ||      ||||  || |   ||| | |  | ||    | | |   ||| ||||  | |                          
ATCTTCTGGAGAATAAAGGTGTGCCTGGGCCTTATCTTATAGTTGCTCCAAAAGCTGTGCTACCAAATTGGGTAAACGAGTTTGCAACATGGGTACCAAGgta------------tgttgcaaacaatatttctcttggtactgagaaattgcactg-----gtatgaatgt---tatgtctgaaaatcagcctttt---tgtttttttgacag-------------------------

upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G19310.1 (Arabidopsis thaliana), 5'ss of exon 7
ATCTCGTGGAGAACAAAGGTGTAACTGGGCCCCATTTGATTGTGGCTCCAAAGGCTGTGTTACCAAATTGGGTAAATGAATTCTCAACATGGGCTCCTAGgtacacactcagctttgtttgaaataaaacatctctct---ctctctctctctctctctctctctgtatatatatatatatatatatatatatatcctctgcatgtgttttgaataacttacaggttgtcttcctgatccag
||||  | ||||  |||| | |   |||||| ||| | ||  |||||||||| |||||| |||||||||||| |||||| ||  ||  |||||| || |||||    |  |  | |  |  |   |  ||||   | |    | | |     |  ||   | | |||  || |  | |                                                                
ATCTTCTTGAGAGTAAAGATCTTCATGGGCCTCATCTAATATTGGCTCCAAAAGCTGTGCTACCAAATTGGGAAAATGAGTTTGCATTATGGGCACCCAGgtatgttccaatttattctccattaattacattgatatggagtgtatgaacgttgcttcatttttgtccatttg-acag---------------------------------------------------------------