1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGAACAGCATGCTGTTACCTTTGCTGCTGGTCTAGCCTGTGAAGGCATTAAACCTTTTTGTGCAATCTACTCATCTTTCATGCAGAGAGCTTATGACCAGgcatgccaatcctattaccatatcttcttaatcaaatgctatggtataatattacaatgaaaaaggatttttattttgactggattgaccatctgaacaa...
species | Vitis vinifera |
transcript | Vv05s0020g02130.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATCCTTTTTGTGCAATCTACTCATCTTTCATGCAGAGAGCTTATGACCAG GTGGTGCATGATGTAGATTTGCAGAAGCTGCCAGTGAAATTTGCAATGGACEST: gi|351021499|gb|FQ446043.1|FQ446043
genomic: AACCTTTTTGTGCAATCTACTCATCTTTCATGCAGAGAGCTTATGACCAGgcatgccaat ... cctactgtagGTGGTGCATGATGTAGATTTGCAGAAGCTGCCAGTGAAATTTGCAATGGAC
EST: AACCTTTTTGTGCAATCTACTCATCTTTCATGCAGAGAGCTTATGACCAG GTGGTGCATGATGTAGATTTGCAGAAGCTGCCAGTGAAATTTGCAATGGACEST: gi|33406436|gb|CF212063.1|CF212063
genomic: AACCTTTTTGTGCAATCTACTCATCTTTCATGCAGAGAGCTTATGACCAGgcatgccaat ... cctactgtagGTGGTGCATGATGTAGATTTGCAGAAGCTGCCAGTGAAATTTGCAATGGAC
EST: AACCTTTTTGTGCAATCTACTCATCTTTCATGCAGAGAGCTTATGACCAG GTGGTGCATGATGTAGATTTGCAGAAGCTGCCAGTGAAATTTGCAATGGACEST: gi|351044164|gb|FQ431474.1|FQ431474
genomic: AACCTTTTTGTGCAATCTACTCATCTTTCATGCAGAGAGCTTATGACCAGgcatgccaat ... cctactgtagGTGGTGCATGATGTAGATTTGCAGAAGCTGCCAGTGAAATTTGCAATGGAC
EST: AACCTTTTTGTGCAATCTACTCATCTTTCATGCAGAGAGCTTATGACCAG GTGGTGCATGATGTAGATTTGCAGAAGCTGCCAGTGAAATTTGCAATGGACEST: gi|351025918|gb|FQ427930.1|FQ427930
genomic: AACCTTTTTGTGCAATCTACTCATCTTTCATGCAGAGAGCTTATGACCAGgcatgccaat ... cctactgtagGTGGTGCATGATGTAGATTTGCAGAAGCTGCCAGTGAAATTTGCAATGGAC
EST: AACCTTTTTGTGCAATCTACTCATCTTTCATGCAGAGAGCTTATGACCAG GTGGTGCATGATGTAGATTTGCAGAAGCTGCCAGTGAAATTTGCAATGGAC
genomic: AACCTTTTTGTGCAATCTACTCATCTTTCATGCAGAGAGCTTATGACCAGgcatgccaat ... cctactgtagGTGGTGCATGATGTAGATTTGCAGAAGCTGCCAGTGAAATTTGCAATGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAACAGCATGCTGTTACCTTTGCTGCTGGTCTAGCCTGTGAAGGCATTAAACCTTTTTGTGCAATCTACTCATCTTTCATGCAGAGAGCTTATGACCAGgcatgccaatcctattaccatatcttcttaatcaaatgctatggtataatattacaatgaaaaaggatttttattttgactggattgaccatctgaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaag