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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCAGCTTCTCTAGCAGTTGCAATTTTGAAGAAGAAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAGgttttcttactcactgttatttgagtattgagaaatctaccaaatttacagataaatattattatattagctgcttcatatatgtctgcaccttgtaaatttccttgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g01880.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G28660.1 (Glycine max), 5'ss of exon 7
GATGCAGCTTCTCTAGCAGTTGCAATTTTGAAGAAGAAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAGgttttcttactcactgttatttgagtattgagaaatctaccaaatttacagataaatattatta-tattagctgcttcata----tatgtctgcaccttgtaaatt--tccttgcag------------------------------------------
||||| ||||| ||  | |||||||||||||||||  ||   ||||| | |||||||||||||||||||||||||||| ||||||||||  | | ||   | |   |||||| |||  |    ||| |     ||||| |  | || ||  |   |  || | |  |    |     ||| |  ||| | ||  |  |  ||                                           
GATGCGGCTTCCCTCTCTGTTGCAATTTTGAAGAAACAATTTCATGGGCGGATTTTCTTGGGTTGTGATAATCATCCCTTATCCAGgtta-catgctatatatcccttgagt-ttgcaactattacaatggagacagagatttcttctttctgagatttgttccgcactcttgcaattgccctgtgttagttagtgatgccaacatatgtttcctgctatttctgacctttctaaatgttgtcag

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G09370.1 (Glycine max), 5'ss of exon 6
GATGCAGCTTCTCTAGCAGTTGCAATTTTGAAGAAGAAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAGgttttct-tactcactgttatttgagtattgagaaatctaccaaatttacagataaatattattatattagctgcttcatatatgtctgcacct-tgtaaatttccttgcag--------------------------------------------
||||||||||| ||  |||||||||| |||||||| |||   | ||| |||||||||||||||||||||||||||||  | || |||||   |    || || | | |||   | | | |     |  |   || |||   | |  ||  |   || | | ||  | |   | |  |  | | || |||  |||   |                                            
GATGCAGCTTCCCTCTCAGTTGCAATCTTGAAGAAAAAATTCCGTGGGCAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAGgttgggtgctttctctttaacttgtcaagtaacattctgattattcttgcaggatatttctaccagtctatcagattgttgtgattatatatatatatatattcactttttggttaaaagaacaatctcacatccacaccgctgctgtgttttcag

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G26450.1 (Glycine max), 5'ss of exon 6
GATGCAGCTTCTCTAGCAGTTGCAATTTTGAAGAAGAAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAGgt-------tttcttactcact-gttatttgagtattgagaaatctaccaaa-----tttacagataaat---attattatattagctgcttcatata-tgtctgcaccttgtaaatttccttgcag-----------------------
||||||||||| ||  |||||||||| |||||||| ||    | ||| |||||||||||||||||||||||||||||  | || ||||       |||||   | ||| || |  | | | ||||  | |||  ||       | | |   | |||   | | | ||  |   |  ||| |  | | | ||        |||  | ||  ||                        
GATGCAGCTTCCCTCTCAGTTGCAATCTTGAAGAAAAACTTCCGTGGACAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAGgttggctgctttctctttaacttgtcaaattattcttgattattcttgcaggatgtttctgccagtcaatcagactgtcatgatttttttttctttcactttttggttaaaagaaacattctcacactcacactgctgatgtgttttcag

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G10460.2 (Glycine max), 5'ss of exon 6
GATGCAGCTTCTCTAGCAGTTGCAATTTTGAAGAAGAAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAGgttttcttactcactgttatttgagtattgagaaatctaccaaatttacagataaatattattatattagctgcttcatatatgtctgcaccttgtaaatttccttgcag------------------------------
||||||||||| ||  | || |||||||| |||||  ||   | |||    ||||||||||| ||||||||||||||| ||||||||||  | |  |   |||   |||||| |  |   || | |    |||  ||||   |       ||||   |||    | |  |   |        | || |  ||   |                              
GATGCAGCTTCACTCTCTGTCGCAATTTTAAAGAAACAATTTCGTGGGAGAATTTTCTTGGGATGTGATAATCATCCCTTATCCAGgtta-catgttatatgtcccttgagtttacaactattttctttctttg-agatttgttcctcactattgcttgccatgtgttaggtagtgatgccaacatatgtttcttgctctctctgaccctttctaaatgttgtcag

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G10460.3 (Glycine max), 5'ss of exon 6
GATGCAGCTTCTCTAGCAGTTGCAATTTTGAAGAAGAAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAGgttttcttactcactgttatttgagtattgagaaatctaccaaatttacagataaatattattatattagctgcttcatatatgtctgcaccttgtaaatttccttgcag------------------------------
       |||| ||  | || |||||||| |||||  ||   | |||    ||||||||||| ||||||||||||||| ||||||||||  | |  |   |||   |||||| |  |   || | |    |||  ||||   |       ||||   |||    | |  |   |        | || |  ||   |                              
-------CTTCACTCTCTGTCGCAATTTTAAAGAAACAATTTCGTGGGAGAATTTTCTTGGGATGTGATAATCATCCCTTATCCAGgtta-catgttatatgtcccttgagtttacaactattttctttctttg-agatttgttcctcactattgcttgccatgtgttaggtagtgatgccaacatatgtttcttgctctctctgaccctttctaaatgttgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34415661|gb|CF414415.1|CF414415
EST:     AAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAG                         GCAGGAATTAATGGACTTGGTTAATAAAAGTGGGAAATTCGGTAAAAAGTN
genomic: AAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAGgttttcttac ... ttccttgcagGCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTT
EST: gi|34320535|gb|CF373289.1|CF373289
EST:     AAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAG                         GCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTT
genomic: AAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAGgttttcttac ... ttccttgcagGCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTT