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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGCACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAAgtaagtaaaattgctgatcatctacttattcttcttgttgctgttcttaaggtttggtacctttattcctgatcttaatattctgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g00750.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351014847|gb|FQ438047.1|FQ438047
EST:     CACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAA                         ACTGACCAAATGGGCCGCATTGTTAATGAGCTGGATACAATTCAATTCTCA
genomic: CACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAAgtaagtaaaa ... tattctgcagACTGACCAAATGGGCCGCATTGTTAATGAGCTGGATACAATTCAATTCTCA
EST: gi|110701974|gb|EE080154.1|EE080154
EST:     CACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAA                         ACTGACCAAATGGGCCGCATTGTTAATGAGCTGGATACAATTTCA-TTCTC
genomic: CACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAAgtaagtaaaa ... tattctgcagACTGACCAAATGGGCCGCATTGTTAATGAGCTGGATACAATT-CAATTCTC
EST: gi|110417235|gb|EC983274.1|EC983274
EST:     CACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAA                         ACTGACCAAATGGGCCGCATTGTTAATGAGCTGGATACAATTCAATTCTCA
genomic: CACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAAgtaagtaaaa ... tattctgcagACTGACCAAATGGGCCGCATTGTTAATGAGCTGGATACAATTCAATTCTCA
EST: gi|351044413|gb|FQ442944.1|FQ442944
EST:     CACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAA                         ACTGACCAAATGGGCCGCATTGTTAATGAGCTGGATACAATTCAATTCTCA
genomic: CACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAAgtaagtaaaa ... tattctgcagACTGACCAAATGGGCCGCATTGTTAATGAGCTGGATACAATTCAATTCTCA
EST: gi|110400763|gb|EC967341.1|EC967341
EST:     CACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAA                         ACTGACCAAATGGGCCGCATTGTTAATGAGCTGGATACAATTCAATTCTCA
genomic: CACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAAgtaagtaaaa ... tattctgcagACTGACCAAATGGGCCGCATTGTTAATGAGCTGGATACAATTCAATTCTCA
EST: gi|110403990|gb|EC969898.1|EC969898
EST:     CACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAA                         ACTGACCAAATGGGCCGCATTGTTAATGAGCTGGATACAATTCAATTCTCA
genomic: CACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAAgtaagtaaaa ... tattctgcagACTGACCAAATGGGCCGCATTGTTAATGAGCTGGATACAATTCAATTCTCA
EST: gi|351033770|gb|FQ447808.1|FQ447808
EST:     CACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAA                         ACTGACCAAATGGGCCGCATTGTTAATGAGCTGGATACAATTCAATTCTCA
genomic: CACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAAgtaagtaaaa ... tattctgcagACTGACCAAATGGGCCGCATTGTTAATGAGCTGGATACAATTCAATTCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTTGCACAAACAATTGAAGTGGGAACAGGAACCGCTGTTACCTTAAAAGGCCAAgtaagtaaaattgctgatcatctacttattcttcttgttgctgttcttaaggtttggtacctttattcctgatcttaatattctgcag

- - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - GCTGTT