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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCACATTATAAAGGATGTACCAAATACCAACTTTAGGCACATCATACTAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttagcctttctgtttaaattgttgcttgcatttcttttcagaagttaaatattgtagtctatcttgcacctgtagcatcttatttcatatcaat...

Basic information

species Vitis vinifera
transcript Vv05s0020g00460.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G14490.1 (Glycine max), 5'ss of exon 7
GTGGCACATTATAAAGGATGTACCAAATACCAACTTTAGGCACATCATACTAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttagcctttctgtttaaattgttgcttgcatttcttttcagaagttaaatattgtagtctatcttgcacctgtagcatcttatttcatatcaat-----
||||||||||||||| |||||||||||| | || ||||||||||| ||||| ||||||||||| ||||||||||| |||||||| |||||| | ||||||||| || |    |||||| | | | | ||  ||  ||   |||| | | | ||  |  |   ||  |  ||  || | |||  |    | | | || | |     
GTGGCACATTATAAAAGATGTACCAAATCCAAATTTTAGGCACATTATACTGGAGAACAATGAAAATAAGCCAGTAACTAATAGCAGAGACGCACAAGAGgtatatatta--tttctgctcagaatttt--tttaataagttttgaaatggtatgttcttctgttaacattttacat-tagtgtaagttattacatgagtagagt

upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G03590.1 (Glycine max), 5'ss of exon 6
GTGGCACATTATAAAGGATGTACCAAATACCAACTTTAGGCACATCATACTAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatt--------tagcctttctgtttaaattgttgcttgca---tttcttttcagaagttaaatattgtagtctatcttgcacctgtagcatcttatttcatatcaat
||||||||| ||||| |||||||||||| | || ||||||||||| | ||| ||||||||||| ||||||||||| |||||||| |||||||| ||||||||| |||        |    ||| |  | |  ||     | |||   | |  ||| || | || |||| ||||   |||  | ||   ||||  |   | |          
GTGGCACATCATAAAAGATGTACCAAATCCAAATTTTAGGCACATTACACTGGAGAACAATGAAAATAAGCCAGTAACTAATAGCAGAGACACACAAGAGgtatattatttctgctcaattttttaataagttttgaaatggcaggttcttcttttagcattttaatagtgtaagttat--tacatgagtagagttgcactg---------

upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA17G04270.1 (Glycine max), 5'ss of exon 3
GTGGCACATTATAAAGGATGTACCAAATACCAACTTTAGGCACATCATACTAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttagcctttctgtttaaattgttgcttgcatttcttttcagaagttaaatattgtagtctatcttgcacctgtagcatcttatttcatatcaat----
||||||||| ||||| ||||| |||||| | || ||||||||||| |||||||||||||||||||| || || || |||||||| |||||||| |||||||||  | ||   ||| |  |  |  ||  | | |  |  |  |  |||  ||  | |     | | | | |  |    |   | |||| |   |  | |     
GTGGCACATCATAAAAGATGTGCCAAATGCAAATTTTAGGCACATTATACTAGAGAACAATGAGAACAAACCTGTCACTAATAGCAGAGACACACAAGAGgtatgtatattgttttt--tggatctgcagttcgtttaccaatgtaga--tttgacaagtctgcccaacctataggcatttaaccttaatgtttgactaagttt

upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G36110.1 (Glycine max), 5'ss of exon 7
GTGGCACATTATAAAGGATGTACCAAATACCAACTTTAGGCACATCATACTAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttagcctttctgtttaaattgttgcttgcatttcttttcagaagttaaatattgtagtctatct-tgcacctgtagcatcttatttcatatcaat--
|||| |||| ||||| |||||  ||||| | || ||||||||||| |||||||||||||||||||| || || || |||||||| |||||||| |||||||||  | ||   |||   ||    |      || | || |   |    | || |  | | |   | | || |  ||   || |||    |||    | | |  
GTGGTACATCATAAAAGATGTGTCAAATGCAAATTTTAGGCACATTATACTAGAGAACAATGAGAACAAACCTGTTACTAATAGCAGAGACACACAAGAGgtatgtatattgttt---ttcggttccgcagttcctttaccaatgtagatttgacaagtctgcccaacctataaacacttaacattaatttttgagtaagttt

upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G48110.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGGCACATTATAAAGGATGTACCAAATACCAACTTTAGGCACATCATACTAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttagcctttctgtttaaattgttgcttgcatttcttttcagaagtta--aatattgtagtctatcttgcacctgtagcatcttatttcatatcaat
 |||||||| ||||| ||||| || |||| | | || ||||||||||||||| ||||||||||||||||||| || || || ||| ||||||| ||||||||  ||||   | | ||     |    |||      ||    ||||||| ||   |||||   | | | |  ||||                          
ATGGCACATCATAAAAGATGTTCCCAATAGCTATTTCAGGCACATCATACTACAGAACAATGAGAATAAGCCGGTCACCAACAGTCGAGACACACAAGAGgttaattt--tcctactagaccacgctttgaagattttcacattcagaatttgctaatatatcattttcttctgcag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717120|gb|FC069558.1|FC069558
EST:     TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG                         ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAAATCACAC
genomic: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAA-TCACAC
EST: gi|30321411|gb|CD004673.1|CD004673
EST:     TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG                         ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
genomic: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
EST: gi|30129749|gb|CB915088.1|CB915088
EST:     TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG                         ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
genomic: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
EST: gi|30127739|gb|CB913078.1|CB913078
EST:     GAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG                         ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
genomic: GAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
EST: gi|30134355|gb|CB919693.1|CB919693
EST:     TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG                         ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
genomic: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
EST: gi|71862152|gb|DT011207.1|DT011207
EST:     TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG                         ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
genomic: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
EST: gi|30321832|gb|CD005094.1|CD005094
EST:     TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG                         ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
genomic: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
EST: gi|27581269|gb|CB003964.1|CB003964
EST:     TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG                         ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
genomic: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA