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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGACCACAGTGTAGCATCTCAACTTGCTCAACAAAAAGAATTCAATCTGAGAAAGCCACCTTCTTTCCATTATGACTTACTTCTTTTGGGTTTCATGgtatgaaaaatctccttttcctacatctttgccttttcaaatgcctcacttcttctttttttttcctgtaattgaaatatatggcacatgatctccagttgcatcgaacttgatattcaattatttgtcacttcgtgacag

Basic information

species Vitis vinifera
transcript Vv05s0020g00440.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G03600.1 (Glycine max), 5'ss of exon 10
TTTTGACCACAGTGTAGCATCTCAACTTGCTCAACAAAAAGAATTCAATCTGAGAAAGCCACCTTCTTTCCATTATGACTTACTTCTTTTGGGTTTCATGgtatgaaaaatctc---cttttcctacatctttgccttttcaaa-----------------tgcctcacttct------tctttttttttcctgtaa---ttgaaat-atatggcacatgatctccag--ttgcatcgaacttgatat--tcaattatt-tgtcacttcgtgacag----------------
||||||||| ||||| |||||||| |||||||| || ||||| |||||  | |||||||| ||||| ||||||||||| || ||||| ||||| |||||||||    | |   |   || ||  |    |||||  || | |||                 |||||   |||       ||||| |||| ||| |     |||| || | || |    ||| |||| |  ||||    | ||  || |  ||  | ||| || ||| |  ||| |                 
TTTTGACCATAGTGTGGCATCTCAGCTTGCTCAGCAGAAAGAGTTCAACTTAAGAAAGCCCCCTTCCTTCCATTATGATTTGCTTCTATTGGGATTCATGgtacatgatactccttgctctttttgatcctttgatttataaaaaaattgttttggttatttgccttttttcccaatgctctttgttttccctttggaatttgagatgacattgtgtgtgacctcctgatttgctgtaagctgaatgtgatccgtgattgtgacacatt-tgatatcttgaataaatgttag

upper sequence: Vv05s0020g00440.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G14520.1 (Glycine max), 5'ss of exon 12
TTTTGACCACAGTGTAGCATCTCAACTTGCTCAACAAAAAGAATTCAATCTGAGAAAGCCACCTTCTTTCCATTATGACTTACTTCTTTTGGGTTTCATGgtatgaaaaatc---tccttttcctacatctttgccttttcaaa--tgcctcacttcttctttttttttcctgtaattgaaatatatggcacatgatctccagttgcatcgaacttgatattc--aattatttgtcacttcgtgacag-----------------------------------------
||||||||| ||||| |||||||| |||||||| || ||||| |||||  | |||||||| ||||| ||||||||||| || ||||| ||||| || ||||||    | |     | || ||  |    |||||| | |  |||  ||| |   | |||    |||||||   |  |     | |      |   || |    |  ||| | |  ||   | |  | || ||||| |  |       |                                         
TTTTGACCATAGTGTGGCATCTCAGCTTGCTCAGCAGAAAGAGTTCAACTTAAGAAAGCCCCCTTCCTTCCATTATGATTTGCTTCTATTGGGATTTATGgtacatgatactcgttgctcttttttatcctttgcttatataaaattgctttggtgctttgccttttttctaatgctctttgttttcctttcg-aatttgagatgacattgtatatggcctcctgatttgtttgtgaactgaatgtggtccttggttgtgacacatttgatatgttatattaatgacag