1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGGAATGCTTAACAATATGGGGTTAGAGATGTTGATGAACATGTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATGgttattgctctctttctctctctcacatgtgtttatttactaattattctgattctcaacctgtgttccattttgttcttccag
species | Vitis vinifera |
transcript | Vv04s0210g00220.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATG TACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGGEST: gi|110360433|gb|EC923529.1|EC923529
genomic: GTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATGgttattgctc ... gttcttccagTACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGG
EST: GTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATG TACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGGEST: gi|30135176|gb|CB920514.1|CB920514
genomic: GTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATGgttattgctc ... gttcttccagTACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGG
EST: GTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATG TACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGGEST: gi|110717779|gb|EE093932.1|EE093932
genomic: GTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATGgttattgctc ... gttcttccagTACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGG
EST: CTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATG TACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGGEST: gi|30133230|gb|CB918569.1|CB918569
genomic: CTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATGgttattgctc ... gttcttccagTACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGG
EST: TGAATATTCCCAGCAGATCTGATG TACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGGEST: gi|110715139|gb|EE092844.1|EE092844
genomic: TGAATATTCCCAGCAGATCTGATGgttattgctc ... gttcttccagTACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGG
EST: GTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATG TACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGGEST: gi|110385709|gb|EC950257.1|EC950257
genomic: GTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATGgttattgctc ... gttcttccagTACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGG
EST: GTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATG TACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGGEST: gi|27583147|gb|CB005842.1|CB005842
genomic: GTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATGgttattgctc ... gttcttccagTACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGG
EST: GTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATG TACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGG
genomic: GTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATGgttattgctc ... gttcttccagTACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGAATGCTTAACAATATGGGGTTAGAGATGTTGATGAACATGTTTGGTGGACTCGGGGCTGGCAGTATGAATATTCCCAGCAGATCTGATGgttattgctctctttctctctctcacatgtgtttatttactaattattctgattctcaacctgtgttccattttgttcttccag
- - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT