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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAAAGTCTGAGTCTGTTTGAAATGAATGCCTCCACAAGCATCATCTCTGCTTCCGAAGCCTATGCAGGATACTTCACTCCCTATCAATCCAGgtgaagcagaaggtacctgacaataggtatagtcttagatattaacacgtaaatgaaaaatctcaagttatgttttcttgtttacttgtccctctag

Basic information

species Vitis vinifera
transcript Vv04s0044g01970.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G22010.1 (Glycine max), 5'ss of exon 6
GGTGAAAGTCTGAGTCTGTTTGAAATGAATGCCTCCACAAGCATCATCTCTGCTTCCGAAGCCTATGCAGGATACTTCACTCCCTATCAATCCAGgtgaagcagaaggtacctgacaataggtatagtcttagatattaacacgtaaatgaaaaatctcaagttatgtttt---cttgtttacttgtccctctag
||||||||||| || || ||||||||||||||||||||||| || || |||||||| | |||| ||| ||||||||| ||||| |||||||||||||||||||  |||||| | | | |  |      || | | || ||  |  ||| ||  | ||| ||| ||| ||||   ||  |||||| |   || |||
GGTGAAAGTCTCAGCCTTTTTGAAATGAATGCCTCCACAAGGATAATTTCTGCTTCTGCAGCCAATGGAGGATACTTTACTCCTTATCAATCCAGgtgaagca--aggtacttaaaagtgagagctacctaaaa-atcaatgcaaaaa-gatgactcttaagctatattttgttctcttttactggcttctgtag

upper sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G32760.1 (Glycine max), 5'ss of exon 7
GGTGAAAGTCTGAGTCTGTTTGAAATGAATGCCTCCACAAGCATCATCTCTGCTTCCGAAGCCTATGCAGGATACTTCACTCCCTATCAATCCAGgtgaagcagaaggtacctgacaataggtatagtcttagatattaacacgtaaatgaaaaatctcaagttatgtttt---cttgtttacttgtccctctag
                                                             || ||| ||||||||||||||| |||||||||||||||||||  |||||| | | | |  |    | || | | || ||  |  |||    |    | ||||||| ||||   ||  |||| | |   ||  ||
-------------------------------------------------------------CCAATGGAGGATACTTCACTCCTTATCAATCCAGGTGAAGCA--AGgtacttaaaagtgagagctgcctaaaa-atcaatgcaaaaagatgactcttaaagttatattttgttctcttttattggcttctgcag

upper sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G36000.1 (Glycine max), 5'ss of exon 7
GGTGAAAGTCTGAGTCTGTTTGAAATGAATGCCTCCACAAGCATCATCTCTGCTTCCGAAGCCTATGCAGGATACTTCACTCCCTATCAATCCAGgtgaagcagaaggtacctgacaataggtatagtcttagatattaacacgtaaatgaaaaatct---caagtta--tgttttcttgtttact-tgtccctctag
||||| ||||| ||||| || | ||||| |||||||| |||  | ||   ||| || ||||||| | | ||||| |||||||| ||||||||||||||||||| ||||||| | | | |  | | || || | |  | ||   ||| | | |   | |    ||||||  |||| || | ||| |    |  ||  ||
GGTGAGAGTCTCAGTCTCTTGGGAATGAGTGCCTCCAGAAGATTGATTGATGCATCTGAAGCCTTTACTGGATATTTCACTCCTTATCAATCCAGgtgaagcacaaggtacttaaaagtgagaacagcctaaaa-gtcaat--gtagagggatggtttttttaagttaaatgttgtcctcttttcaacatttctgcag

upper sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G09420.1 (Glycine max), 5'ss of exon 5
GGTGAAAGTCTGAGTCTGTTTGAAATGAATGCCTCCACAAGCATCATCTCTGCTTCCGAAGCCTATGCAGGATACTTCACTCCCTATCAATCCAGgtgaagcagaaggtacctgacaataggtatagtcttagatattaacacgtaaatgaaaaatctcaagtta--tgttttcttgtttact-tgtccctctag
||||| ||||| || || || | |||| |||| || | |||  | ||   ||| || ||||||| | | ||||| |||||||| ||||||||||||||||||| ||||||| | | | || | | || || | | || ||     ||  ||    | | ||||||  |||| || | ||| ||   |  ||  ||
GGTGAGAGTCTCAGCCTCTTAGGAATGGATGCATCTAGAAGATTGATTGATGCATCTGAAGCCTTTTCTGGATATTTCACTCCTTATCAATCCAGgtgaagcacaaggtacttaaaagtaagaacagcctaaaa-atcaatgta-aagggatgggttttaagttaaatgttgtcctcttttctacatttctgcag