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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGGGTTGGCACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGgtctaggaatattagaataggcgcactcattttgctctgtattgtgttgtcttatatctttttagattgtaacatttaataatataacatctgtcttttgtag

Basic information

species Vitis vinifera
transcript Vv04s0044g01840.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01840.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G09370.2 (Glycine max), 5'ss of exon 7
ATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGGGTTGGCACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGgtctaggaatattagaataggcgcactcattttgctctgtattgtgttgtcttatatctttttagattgtaa----catttaataatataaca--tctgtcttttgtag
|||||| ||||| || || ||||||||||| ||||| |||||||||||||||||||| ||||| || || || ||||||||| ||||||| ||||| ||||||  |  |  || ||||     || |  | ||   ||| ||| | ||   || | | ||  |   || |      ||| ||||  | ||| |  | ||| |||  |||
ATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGgtccggagaattttgaattatt-catttttgttctcctgaattatttttcattgtctgttactctgttttggcctccatataattgtttaatacttttgtttttcttag

upper sequence: Vv04s0044g01840.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G36040.1 (Glycine max), 5'ss of exon 7
ATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGGGTTGGCACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGgtctaggaatattagaataggcgcactcattttgctctgtattgtgttgtcttatatctttttagattgtaa----catttaataatataaca--tctgtcttttgtag
|||||| |||||||| || ||||||||||| || || |||||||| ||||||||||| || || || || || ||||||||| ||||||| ||||| ||||||| |  |  || ||||    | | |  | ||   ||| ||| | ||   ||   | ||  |   || |      ||| ||||  | ||| |  | ||| |||  |||
ATCAGGTAGAGCACGGAGAGATGCTGCAGCACGAGCTATGCAGGGGTGGCACTCACAACGCCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGgtctggagagttttgaattattg-atttttgttctcctgaattatctttcattgcctgttactctgttttggccgccatataattgtttaatacttttgtttttcttag

upper sequence: Vv04s0044g01840.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G21840.1 (Glycine max), 5'ss of exon 8
ATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGGGTTGGCACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGgtctagg-aatattagaataggcgcactcattttgctctgtattgtgttgtcttatatctttttagattgtaacatttaataatataacatctgtcttttgtag
|||||| || ||||| || |||||||||||  |||| |||||||||||||||||||| ||||| ||| | || |||||| || |||| || ||||| ||||||| |  |||| |      | |  | | |||        | || |  |   || ||  |||  |      |  |||   | |||     | ||| |||  |||
ATCAGGTAGGGCACGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTTAGCAATGGTGAATTTAGTGATCCTATTATTAAGgtctggttaatacttattgtgacagagtgattc------atgttctccttaattttacttttacaaggcaaataattgttttatac----tttgtttttcatag

upper sequence: Vv04s0044g01840.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G32820.1 (Glycine max), 5'ss of exon 6
ATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGGGTTGGCACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGgtctaggaatattagaataggcgcactcattttgctctgtattgtgttgtcttatatctttttagattgtaacatttaataatataacatctgtcttttgtag
||  || || || || || |||||||||||  |||| |||||||||||||||||||| ||||| ||| | || |||||| || |||| || ||||| ||||||| |  | |||    |  | |   | | | | |||  || | | || | ||| ||     || |||||    |||| |           ||| |||  |||
ATTGGGTAGGGCGCGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTTAGCAATGGTGAATTTAGTGATCCTATTATTAAGgtctggttaaattg---tgagagtgattaatgttctccttaattt-ttcttttacatgcacata-attgt--tttttact----------ttgtttttcatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110703600|gb|EE080590.1|EE080590
EST:     ACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAG                         GATAAGAGCTCCATTTCTTTGCAAAAGCGGGAAAAACAGCTCAAAAACATT
genomic: ACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGgtctaggaat ... tcttttgtagGATAAGAGCTCCATTTCTTTGCAAAAGCGGGAAAAACAGCTCAAAAACATT
EST: gi|351041413|gb|FQ447540.1|FQ447540
EST:     ACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAG                         GATAAGAGCTCCATTTCTTTGCAAAAGCGGGAAAAACAGCTCAAAAACATT
genomic: ACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGgtctaggaat ... tcttttgtagGATAAGAGCTCCATTTCTTTGCAAAAGCGGGAAAAACAGCTCAAAAACATT
EST: gi|352794399|gb|FQ481630.1|FQ481630
EST:     ACTCACAGCGTCCTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAG                         GATAAGAGCCCCATTTCTTTGCAAAAGCGGGAAAAACAGCTCAAAAACATT
genomic: ACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGgtctaggaat ... tcttttgtagGATAAGAGCTCCATTTCTTTGCAAAAGCGGGAAAAACAGCTCAAAAACATT
EST: gi|30302776|gb|CB979570.1|CB979570
EST:     TGGTAACGGTGAAGTTGGTCANTCAATTATCAAG                         GATAAGAGCTCCATTTCTTTGCAAAAGCGGGAAAAACAGCTCAAAAACATT
genomic: TGGTAACGGTGAAGTTGGTGACCCGATTATCAAGgtctaggaat ... tcttttgtagGATAAGAGCTCCATTTCTTTGCAAAAGCGGGAAAAACAGCTCAAAAACATT
EST: gi|110688872|gb|EE067920.1|EE067920
EST:     ACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCAATTATCAAG                         GATAAGAGCTCCATTTCTTTGCAAAAGCGGGAAAAACAGCTCAAAAACATT
genomic: ACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGgtctaggaat ... tcttttgtagGATAAGAGCTCCATTTCTTTGCAAAAGCGGGAAAAACAGCTCAAAAACATT
EST: gi|71880737|gb|DT029792.1|DT029792
EST:     ACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCAATTATCAAG                         GATAAGAGCTCCATTTCTTTGCAAAAGCGGGAAAAACAGCTCAAAAACATT
genomic: ACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGgtctaggaat ... tcttttgtagGATAAGAGCTCCATTTCTTTGCAAAAGCGGGAAAAACAGCTCAAAAACATT