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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAGgtatttacatacaacaccccacaccccacaccccaacaccccttctctctctctctctcacacacacacacatacacacaaaacaagtaaacacacagataaacatgcacactagcttcagttatgttctttttatttccttgcttcaatgttttttctccgtgaacaccaagtttccttgtgtttgtgtccaatctcag

Basic information

species Vitis vinifera
transcript Vv04s0044g01290.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01290.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G32510.1 (Glycine max), 5'ss of exon 7
ATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAGgtatttacatacaacaccccacaccccacaccccaacaccccttctctctctctctctcacacacacacacatacacacaaaacaagtaaacacacagataaacatgcacactagcttcagttatgttctttttatttccttgcttcaatgttttttctccgtgaacaccaagtttccttgtgtttgtgtccaatctcag
|||||||||||| | |||||||| || ||||| |||||||| || |||||||| |||||||||     | | ||    |    |  |      ||| |       |     | ||| | | |      || ||     |    |   |  ||       | | |||    ||| | |  | | || |||| ||| ||                                                               
ATAAATTCTTCTGCCTCAATGCTTTCATTCAAAGGAAGTCCATACTGGATGGCACCTGAGgtaa----aaaaaattttcttttcttc----tgcaata-------ttgaaatttcttttaaaagtgagcatattttt-ctttcctcttccacttctttctcaccataattactggat--aatgatattctcttttttag-------------------------------------------------------------

upper sequence: Vv04s0044g01290.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G15870.1 (Glycine max), 5'ss of exon 8
ATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAGgtatttacatacaacaccccacaccccacaccccaacaccccttctctctctctctctcacacacacacacatacacacaaaacaagtaaacacacagataaacatgcacactagcttcagttatgttctttttatttccttgcttcaatgttttttctccgtgaacaccaagtttccttgtgtttgtgtccaatctcag
|||||||||||||| || ||||| |||||||| || ||||| || |||||||| || ||||||   |  ||                               || |  || ||| | |||||  |    |  |||     || |||| | |  |  |  |   | | |||  ||  ||    | | | |      ||| ||| |||                                                      
ATAAATTCTTCTTCCTCCATGCTTTCTTTCAAAGGGAGTCCATACTGGATGGCACCCGAGgta---aagtat------------------------------tttttcctttctttttcacat-cttgtaattacttttgaa-caagaacatccttatct---cttccactgtaagttttaatgtatcccgac-gtttgctttcttag----------------------------------------------------

upper sequence: Vv04s0044g01290.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G39110.1 (Glycine max), 5'ss of exon 7
ATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAGgtatttacatacaacaccccacaccccacaccccaacaccccttctctctctctctctcacacacacacacatacacacaaaacaagtaaacacacagataaacatgcacactagcttcagttatgttctttttatttccttgcttcaatgttttttctccgtgaacaccaagtttccttgtgtttgtgtccaatctcag
|||||||||||||| || ||||| |||||||| || ||||| || |||||||| || ||||||     ||    | ||   |    |||| |     |   |||||             ||| | | |  | ||        ||            |  |    ||| |  ||  |||  | | | ||                                                                        
ATAAATTCTTCTTCCTCCATGCTATCTTTCAAAGGGAGTCCATACTGGATGGCACCCGAGgtaaa-gtatttt-ctcctttcttttcacatcttgtaattacttctga-----------acaaaaatatccgtatctcttccac---------tgtaagttgtaatgtatcctgacttttgctttcttag----------------------------------------------------------------------

upper sequence: Vv04s0044g01290.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G16670.2 (Glycine max), 5'ss of exon 7
ATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAGgtatttacatacaacaccccacaccccacaccccaacaccccttctctctctctctctcacacacacacacatacacacaaaacaagtaaacacacagataaacatgcacactagcttcagttatgttctttttatttccttgcttcaatgttttttctccgtgaacaccaagtttccttgtgtttgtgtccaatctcag
|||||||||||| | || ||||| || ||||| |||||||| || |||||||| |||||||||  |                     |  |  ||| |       |     | ||| | | |      || || |   |    |   |  ||       | | |||    ||| | |  | | || |||| ||| ||                                                               
ATAAATTCTTCTGCCTCGATGCTTTCATTCAAAGGAAGTCCATACTGGATGGCACCTGAGgtaaat--------tgttttttctattattctgcaata-------ttgaaatttcttttaaaagtgagcatattcttccctc-ctcttccacttctttctcaccatagttactggat--aatgatattctcttttttag-------------------------------------------------------------

upper sequence: Vv04s0044g01290.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S387_39V6.1 (Physcomitrella patens), 5'ss of exon 7
ATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAGgtatttacatacaacaccccacaccccacaccccaacaccccttctctctctctctctcacacacacacacatacacacaaaacaagtaaacacacagataaacatgcacactagcttcagttatgttctttttatttccttgcttcaatgttttttctccgtgaacaccaagtttccttgtgtttgtgtccaatctcag
||   | ||   ||||   | |  |||||||||||||| || ||||||||||| |||||||||  |  ||| |      |||||    |              |   |   | | | |   |  ||   | || | |   ||   | | |    |          |||    || ||||  |    ||  |||| || |  || |   |  |  | |||    || |  ||  |  |  | |  | |             
ATTTCTGCTCAATCTTTTCTCCAGTCTTTCAAGGGAAGCCCTTATTGGATGGCTCCTGAGgtaagtg-ataaa----tgcacacttggc--------------tagtttcatttgtatagaaagcatgtagatgctcttcaag--attgattgtat-------tttgc---ttatcttctatacaattagttttgttgc--tgttaggacttcctctctaaaagagcttcacatggctctctactggcag----------

upper sequence: Vv04s0044g01290.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ27940 (Selaginella moellendorffii), 5'ss of exon 5
ATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAGgtatttacatacaacaccccacaccccacaccccaacaccccttctctctctctctctcacacacacacacatacacacaaaacaagtaaacacacagataaacatgcacactagcttcagttatgttctttttatttccttgcttcaatgttttttctccgtgaacaccaagtttccttgtgtttgtgtccaatctcag
 | |        ||||     || ||||| ||||||||||| ||||||||||||||||||||   |   |      |         |||    |  | |  |||       |   |  ||                                                                                                                                            
CTGAGCGTCGAGTCTTTCCCACTTTCTTTTAAGGGAAGTCCGTATTGGATGGCGCCTGAGgttcgtgttt------ctttttcaagcacgagtcggctcgtcttactggagtactttccag-------------------------------------------------------------------------------------------------------------------------------------------

upper sequence: Vv04s0044g01290.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ36728 (Selaginella moellendorffii), 5'ss of exon 5
ATAAATTCTTCTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAGgtatttacatacaacaccccacaccccacaccccaacaccccttctctctctctctctcacacacacacacatacacacaaaacaagtaaacacacagataaacatgcacactagcttcagttatgttctttttatttccttgcttcaatgttttttctccgtgaacaccaagtttccttgtgtttgtgtccaatctcag
 | |        ||||     || ||||| ||||||||||| ||||||||||||||||||||   |   |      |         |||    |  | |  |||       |   |  ||                                                                                                                                            
CTGAGCGTCGAGTCTTTCCCACTTTCTTTTAAGGGAAGTCCGTATTGGATGGCGCCTGAGgttcgtgttt------ctttttcaagcacgagtcggctcttcttactggattactttccag-------------------------------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698751|gb|EE076609.1|EE076609
EST:     CTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAG                         GTTGTAATGAATACAAATGGCTACAGCCTTGCGGTGGATATTTGGAGCTTA
genomic: CTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAGgtatttacat ... ccaatctcagGTTGTAATGAATACAAATGGCTACAGCCTTGCGGTGGATATTTGGAGCTTA
EST: gi|161719911|gb|FC068682.1|FC068682
EST:     CTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAG                         GTTGTAATGAATACAAATGGCTACAGCCTTGCGGTGGATATTTGGAGCTTA
genomic: CTTCTTCAATGCTCTCTTTCAAGGGAAGTCCCTATTGGATGGCGCCTGAGgtatttacat ... ccaatctcagGTTGTAATGAATACAAATGGCTACAGCCTTGCGGTGGATATTTGGAGCTTA