1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATAAGTGGTGTTTCATGCAATTCTCCATATGAGTGGGTTGATAAAACAGGCTCAGAATGGGATTTTAACTCTAATGAGACAGCTGGAGAAACTTTTCGTgttagtattactcgttcaaagtttatgctaataccagaaaattgcttacaatttgaatttcagtctcgataattctttgttctatctatccttgtttggatgaag
species | Vitis vinifera |
transcript | Vv04s0044g00550.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCTCAGAATGGGATTTTAACTCTAATGAGACAGCTGGAGAAACTTTTCGT GTTATCGCATATGATTTTGGGATCAAGCATA-TATATTAAGACGTTTGGC-EST: gi|110693364|gb|EE069531.1|EE069531
genomic: GCTCAGAATGGGATTTTAACTCTAATGAGACAGCTGGAGAAACTTTTCGTgttagtatta ... ttggatgaagGTTATCGCATATGATTTTGGGATCAAGCATAATATATTAAGACGTTTGGCA
EST: GCTCAGAATGGGATTTTAACTCTAATGAGACAGCTGGAGAAACTTTTCGT GTTATCGCATATGATTTTGGGATCAAGCATAATATATTAAGACGTTTGGCAEST: gi|71883756|gb|DT032811.1|DT032811
genomic: GCTCAGAATGGGATTTTAACTCTAATGAGACAGCTGGAGAAACTTTTCGTgttagtatta ... ttggatgaagGTTATCGCATATGATTTTGGGATCAAGCATAATATATTAAGACGTTTGGCA
EST: GCTCAGAATGGGATTTTAACTCTAATGAGACAGCTGGAGAAACTTTTCGT GTTATCGCATATGATTTTGGGATCAAGCATAATATATTAAGACGTTTGGCA
genomic: GCTCAGAATGGGATTTTAACTCTAATGAGACAGCTGGAGAAACTTTTCGTgttagtatta ... ttggatgaagGTTATCGCATATGATTTTGGGATCAAGCATAATATATTAAGACGTTTGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATAAGTGGTGTTTCATGCAATTCTCCATATGAGTGGGTTGATAAAACAGGCTCAGAATGGGATTTTAACTCTAATGAGACAGCTGGAGAAACTTTTCGTgttagtattactcgttcaaagtttatgctaataccagaaaattgcttacaatttgaatttcagtctcgataattctttgttctatctatccttgtttggatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA