1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CGCAAACCATGGCCAACCATAAGCAATGGTGCTAAAGATTTTGTAAAGAAGTTACTAGTGAAAGACCCTCGGGCAAGACTTACTGCTGCTCAGGCCCTATgtgagtatccagttcttctcctggagaatataaatgatgattattacagtctactggaaattggaacatgtgtcttaacaaaatacttcttgtgttggtt...
species | Vitis vinifera |
transcript | Vv04s0023g03420.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTTACTAGTGAAAGACCCTCGGGCAAGACTTACTGCTGCTCAGGCCCTAT CACATCCATGGGTTAGAGAAGGAGGAGATGCCTCTGAGATTCCGATCGATAEST: gi|161714014|gb|FC064089.1|FC064089
genomic: GTTACTAGTGAAAGACCCTCGGGCAAGACTTACTGCTGCTCAGGCCCTATgtgagtatcc ... actttttcagCACATCCATGGGTTAGAGAAGGAGGAGATGCCTCTGAGATTCCGATTGATA
EST: GTTACTAGTGAAAGACCCTCGGGCAAGACTTACTGCTGCTCAGGCCCTAT CACATCCATGGGTTAGAGAAGGAGGAGATGCCTCTGAGATTCCGATCGATAEST: gi|30255725|gb|CB971857.1|CB971857
genomic: GTTACTAGTGAAAGACCCTCGGGCAAGACTTACTGCTGCTCAGGCCCTATgtgagtatcc ... actttttcagCACATCCATGGGTTAGAGAAGGAGGAGATGCCTCTGAGATTCCGATTGATA
EST: GTTACTAGTGAAAGACCCTCGGGCAAGACTTACTGCTGCTTAGGCCCTAT CACATCCATGGGTTAGAGAAGGAGGAGATGCCTCTGAGATTCCGATCGATA
genomic: GTTACTAGTGAAAGACCCTCGGGCAAGACTTACTGCTGCTCAGGCCCTATgtgagtatcc ... actttttcagCACATCCATGGGTTAGAGAAGGAGGAGATGCCTCTGAGATTCCGATTGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCAAACCATGGCCAACCATAAGCAATGGTGCTAAAGATTTTGTAAAGAAGTTACTAGTGAAAGACCCTCGGGCAAGACTTACTGCTGCTCAGGCCCTATgtgagtatccagttcttctcctggagaatataaatgatgattattacagtctactggaaattggaacatgtgtcttaacaaaatacttcttgtgttggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa