Sequence
atgc intronic sequence ATGC exonic sequenceTAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgccattttctttcccaaaattgatttctgattaaatgtctaatacttacacttaaaactgtttccatgcctataggcctctaaac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os05g50370.1 (Oryza sativa), 5'ss of exon 7
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgccattttctttcccaaaattgatttctgattaaatgtctaatacttacacttaaaa--ctgtttccatgcctataggcctctaaac-
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CAGGAAGGCAACCCTTTGTGTCCATCCAGATAAATTACAGCAAAGGGGTGCTACAATCAGACAGAAATACATATGCGAGAAGGTTTTTGATCTTCTTAAGgtttgtgcaatgtctacaaaatttgtt---atgattatttggaagttcattttctcatgtgtccttttccatttctgattgcattagtacaagcatgtttgca
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g44310.1 (Oryza sativa), 5'ss of exon 7
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgc-cattttctttcccaaaattgatttc-tgattaaatgtctaatacttac-acttaaaactgtttccatgcctataggcctctaaac
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TAGAAGGGCAACCCTTTGTGTCCATCCCGATAAACTACAACAAAGGGGTGCTACAATCAGACAGAAATATATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtacattatttgttcacatcttatgcatattcttgtggttttcatctttgaatttccacccccagttacttatcagcaattgctaattttcagagaagtt---
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G438895_T01 (Zea mays), 5'ss of exon 9
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgccattttctttcccaaaattgatttctgattaaatgtctaatacttacacttaaaactgtttccatgcctataggcctctaaac
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CAGGAAGGCAACCCTATGTGTCCATCCAGATAAACTACAGCAGAGGGGCGCTACGATCAGACAGAAATACATATGTGAGAAGGTTTTTGATCTTCTTAAGgtatgtgctctgtc---cacattgaatgctctggttatttggaagttggatctctgct-cacctgctgccacctgttttgcag-----------------
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G316635_T03 (Zea mays), 5'ss of exon 6
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgccattttctttcccaaa------attgatttctgatta---aatgtctaatacttacact--taaaactgtttccatgcctataggc-ctctaaac---------------------------------------------------------------
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CAGGAAGGCAACCCTTTGTGTCCATCCAGATAAAGTGCAGCAAAGAGGTGCTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctttg---gtcatcttgctttataaattagttacttatctacagttgcttaagtttcaatatttttgttggtatggctgctgctatactcccaagttctgttagcctcagtcacctctgggagactgggactatgttgatgtttctgcattgctgtggtgcttcacag
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G316635_T01 (Zea mays), 5'ss of exon 6
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgccattttctttcccaaaattgatttctgattaaa--tgtctaatactta-cacttaaaactgtttccatgcctataggcctctaaac
|| || || || |||||||| ||||| || ||| | || ||||| ||||| | || |||||| ||||| ||||| ||||| ||||||||||| ||||||||| | | ||| || || ||| | | | | || | || ||| | | | || || | ||| || | | ||
CAGGAAGGCAACCCTTTGTGTCCATCCAGATAAAGTGCAGCAAAGAGGTGCTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctttg---gtcatcttgctttataaattagttacttatctacagttgcttaagtttcaatatttttgttggtatggctgctgctatactcccaagt
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G37760.1 (Glycine max), 5'ss of exon 7
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcac-cagtctgccattttctttcccaaaattgatttctgattaaatgtctaatacttacacttaaaactgtttccatgccta-taggcctctaaac-
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CAGGAAGGCCACCCTGTGTGTTCATCCTGACAAATTACAGCAACGTGGAGCAAGTATTCAACACAAATACATATGTGAAAAGGTTTTCGATCTTTTGAAGgtatgtaatgcttgctattgctatctttcactttgttgatttt--attcattttttattttgt-tgcaaaaaaatggtcctatacctagtatggataaggaat
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G07550.1 (Glycine max), 5'ss of exon 12
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcac-cagtctgccattttctttcccaaaattgatttctgattaaatgtctaatacttacacttaaaactgtttccatgccta-taggcctctaaac-
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CAGGAAGGCCACCCTGTGTGTTCATCCTGACAAATTACAGCAACGTGGAGCAAGTATTCAACACAAATACATATGTGAAAAGGTTTTCGATCTTTTGAAGgtatgtaatgcatgctattgctatctttcacttagttggttt-tgttca--ttttttattttgctgcaaaaaaaatgtcctatacctagtatggataaggaat
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G25190.1 (Glycine max), 5'ss of exon 9
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgccat-tttctttcccaaaattgattt---ctgattaaat-gtctaatacttacacttaaaactgtttccatgcctataggcctctaaac
|| || ||||| |||||||| ||||||||||| ||||| ||| | || ||||| |||||||| || ||||||||||| || || |||||||| |||||||| |||| | || ||| |||| | ||| |||| | | | || | ||| || | | | | | || | | ||
CAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTACAGCAACGTGGAGCAAGTATTCAACACAAATACATATGTGAGAAAGTCTTTGATCTACTAAAGgtatgtctt--gcatggcatctttcagttaatttatttatttgaaccgtctgcatagggggatatttgc---cagagcaaaccataatgctgttatctatcaagt
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G06160.1 (Glycine max), 5'ss of exon 14
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgccattttctttcccaaaattgatttctgattaaatgtctaata----cttacacttaaaactgtttccatgcctataggcctctaaac--
||| || ||||| |||||||| ||||||||||| ||||| ||| | || || || |||||| | || ||||||||||| ||||| |||||||| |||||||| ||||| | |||||| ||||| ||| |||| | | || | | | || |||| | ||| | | || || |
TAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTACAGCAACGCGGAGCGAGTATTCAAAACAAATACATATGTGAGAAGGTCTTTGATCTCCTAAAGgtatgtcat--gcatgccat---ctttcagttgatttattttgaaccatctgcaaaggaggatttgtcagagcaaaccataataatgt-tgcataactaaaatcta
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G25150.1 (Glycine max), 5'ss of exon 7
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgccattttctttcccaaaattgatttctgattaaatgtcta-atacttacactt---aaaactg-tttccatgcc--tataggcctctaaac
|| || ||||| |||||||| ||||||||||| || || ||| | || ||||| |||||||| || ||||||||||| || || |||||||| |||||||| |||| | || ||| ||||| |||| |||| | | || |||| ||| | | || | | | |||| | | || |||
CAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTGCAGCAACGTGGAGCAAGTATTCAACACAAATACATATGTGAGAAAGTCTTTGATCTCCTAAAGgtatgtctt--gcatggcat---ctttcagttaatttatttatt-tgaaccgtctgcatagggatatttgccagagcaaaccataatgctgttgcataacttaaaa-
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G36520.1 (Arabidopsis thaliana), 5'ss of exon 7
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgt--gtcaccagtctgccattttctttcccaaaattgatttctgattaaatgtctaatacttacacttaaaactgtttccatg--cctataggcctctaaac
|| ||||| || |||||||||||||| ||||| ||||| ||||| ||||||| |||||| ||||| || || || |||||||| || |||||||| ||||| | || |||| | ||| || | | ||||| || || || | | | || ||| | ||| | || || |
CAGGAAAGCTACACTTTGTGTTCATCCAGACAAGTTACAGCAAAGAGGTGCAAACATTCATCAGAAATATATCTGCGAAAAGGTCTTCGATCTTCTTAAGgtattggttcatgttctgttacacctttttacacagtc----tctga----attgctcattcaagaatctggaattgtcttaatgttctaattaatatccag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110363374|gb|EC926957.1|EC926957EST: CAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAG GAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCAT
genomic: CAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcacc ... ttatcctcagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgccattttctttcccaaaattgatttctgattaaatgtctaatacttacacttaaaactgtttccatgcctataggcctctaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattga