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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCGACTCATTACCGACAAAGAGACTAGTAAACCTAGAGGTTATGCTTTCATTGAATATATGCATACACGGGATATGAAAGgtttgctatatagcttgagcatttattggttttcatctgatgtgctttatattttgtttctgaacaccacttgtttgtgtcaaattcag

Basic information

species Vitis vinifera
transcript Vv04s0023g01580.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01580.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os10g02630.1 (Oryza sativa), 5'ss of exon 7
GTCCGACTCATTACCGACAAAGAGACTAGTAAACCTAGAGGTTATGCTTTCATTGAATATATGCATACACGGGATATGAAAGgtttgctatatagcttgag------catttattggttttcatctgatgtgctttatattttgtttctgaacaccacttgtttgtgtcaaattcag---------
|| || ||  | |||||||| || || | |||||||||||| ||||| ||||| || |||||||| || ||||| |||||| ||      | | | ||         | | |||    |   || ||  ||  |   |  |    | |||     || || | | ||  ||  |  |         
GTACGGCTTGTGACCGACAAGGAAACAAATAAACCTAGAGGATATGCATTCATCGAGTATATGCACACCCGGGACATGAAAAgtaaagcttctggtttagcatatctcctctatacagtccaatttggcgtcatcactgatgaagtgctgtcttacattt-tctctgctaatatgtgttctcgcag

upper sequence: Vv04s0023g01580.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G113592_T02 (Zea mays), 5'ss of exon 7
GTCCGACTCATTACCGACAAAGAGACTAGTAAACCTAGAGGTTATGCTTTCATTGAATATATGCATACACGGGATATGAAAGgtttgctatatagcttga-gcatttattggttttcatctgatgtgctttatattttgtttc-tgaacaccacttgtttgtgtcaaattcag
|| || ||  | || || ||||| || |||||||||||||| ||||| |||||||| ||| |||| ||||| || |||||| ||  | |       |||  |||  | ||   |||  | |  | |  || ||| |   || | |   | |  ||   ||| ||      |||
GTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTCATTGAGTATGTGCACACACGAGACATGAAAAgtaagtttctctttttgttgcaaattttccgtttggtttattctctttcataatagcttacattttctctgctaacttgggttctcaccag

upper sequence: Vv04s0023g01580.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G38120.1 (Glycine max), 5'ss of exon 7
GTCCGACTCATTACCGACAAAGAGACTAGTAAACCTAGAGGTTATGCTTTCATTGAATATATGCATACACGGGATATGAAAGgtttgctat-atagcttgagcatttattggttttcatctgatgtgctttatattttgtttctgaacaccacttgtttgtgtcaaattcag
|| ||| |  || | |||||||| || | ||| || || ||||||||||||||||| ||| |||||||| | || ||||||||||  |  | ||  ||| |   ||| ||  || |||     | ||  || || ||         ||| |  | |||||| |   |     
GTTCGATTAGTTGCTGACAAAGATACAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGgttgacactgattacttaa---tttgtttattatcac----tatggcttttaattc--------acatctttggtttgttttgcag----

upper sequence: Vv04s0023g01580.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G07200.2 (Glycine max), 5'ss of exon 7
GTCCGACTCATTACCGACAAAGAGACTAGTAAACCTAGAGGTTATGCTTTCATTGAATATATGCATACACGGGATATGAAAGgttt-gctatatagcttgagcatttattggttttcatctgatgtgctttatattttgtttctgaacaccacttgtttgtgtcaaattcag
|| ||| |  || | |||||||| |  | ||| || || ||||||||||||||||| ||| |||||||| | || ||||||||||  |    || |||| |   ||| ||  || |||    | |   ||||  |    | | ||   |  | ||    |            
GTTCGATTAGTTGCTGACAAAGATATAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGgttgagactgattgcttaa---tttgtttattatcact--acggcttttaattcacatctttggtta--attttgcag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37184757|gb|CF604111.1|CF604111
EST:     ACCTAGAGGTTATGCTTTCATTGAATATATGCATACACGGGATATGAAAG                         CTGCTTATAAACAAGCTGATGGAAGGAAGCTTGATAACAGAAGGGTGCTGG
genomic: ACCTAGAGGTTATGCTTTCATTGAATATATGCATACACGGGATATGAAAGgtttgctata ... tcaaattcagCTGCTTATAAACAAGCTGATGGAAGGAAGCTTGATAACAGAAGGGTGCTGG
EST: gi|56409078|gb|CX017330.1|CX017330
EST:     ACCTAGAGGTTATGCTTTCATTGAATATATGCATACACGGGATATGAAAG                         CTGCTTATAAACAAGCTGATGGAAGGAAGCTTGATAACAGAAGGGTGCTGG
genomic: ACCTAGAGGTTATGCTTTCATTGAATATATGCATACACGGGATATGAAAGgtttgctata ... tcaaattcagCTGCTTATAAACAAGCTGATGGAAGGAAGCTTGATAACAGAAGGGTGCTGG