1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTCGATGACGGATTTCCAACTGTCACCCTTCATTTTGACAAGTCAATTTCTTTGACAGTGTATCCTCATGAGTATCTGTTCCAAGTTAAGgtaagtgaaatgggttccataatttaagtgagaatcctcgactgtcatgcctctttttatgatgtgcctgcaaggttgtttctctgaagttcttcacatt...
species | Vitis vinifera |
transcript | Vv04s0023g00730.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGTCAATTTCTTTGACAGTGTATCCTCATGAGTATCTGTTCCAAGTTAAG GAGTTTGAGTGGTGTATTGGTTGGCAGAACAGTGGGGCACAAACAAAGGATEST: gi|110393757|gb|EC959222.1|EC959222
genomic: AGTCAATTTCTTTGACAGTGTATCCTCATGAGTATCTGTTCCAAGTTAAGgtaagtgaaa ... atttgcgcagGAGTTTGAGTGGTGTATTGGTTGGCAGAACAGTGGGGCACAAACAAAGGAT
EST: AGTCAATTTCTTTGACAGTGTATCCTCATGAGTATCTGTTCCAAGTTAAG GAGTTTGAGTGGTGTATTGGTTGGCAAAACAGTGGGGCACEST: gi|110389046|gb|EC953857.1|EC953857
genomic: AGTCAATTTCTTTGACAGTGTATCCTCATGAGTATCTGTTCCAAGTTAAGgtaagtgaaa ... atttgcgcagGAGTTTGAGTGGTGTATTGGTTGGCAGAACAGTGGGGCAC
EST: AGTCAATTTCTTTGACAGTGTATCCTCATGAGTATCTGTTCCAAGTTAAG GAGTTTGAGTGGTGTATTGGTTGGCAGAACAGTGGGGCACAAACAAAGGAT
genomic: AGTCAATTTCTTTGACAGTGTATCCTCATGAGTATCTGTTCCAAGTTAAGgtaagtgaaa ... atttgcgcagGAGTTTGAGTGGTGTATTGGTTGGCAGAACAGTGGGGCACAAACAAAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCGATGACGGATTTCCAACTGTCACCCTTCATTTTGACAAGTCAATTTCTTTGACAGTGTATCCTCATGAGTATCTGTTCCAAGTTAAGgtaagtgaaatgggttccataatttaagtgagaatcctcgactgtcatgcctctttttatgatgtgcctgcaaggttgtttctctgaagttcttcacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgagaa