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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGCCTAAGAAAGCAAAGTTGTTCTTCAGTACAGCGCTTCAAAATTGGGATGCAGAATTTTATGTGAAAGTTGATGACAAGATAGACCTTGATCTTGgtagggtttttgttttgatctatttataaagaatattagttcttggtattctgtattctttccttagtagatgatgtagatcatttgctttcttttatggtgttacag

Basic information

species Vitis vinifera
transcript Vv04s0008g06480.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G000393_T02 (Zea mays), 5'ss of exon 6
GAGTTGCCTAAGAAAGCAAAGTTGTTCTTCAGTACAGCGCTTCAAAATTGGGATGCAGAATTTTATGTGAAAGTTGATGACAAGATAGACCTTGATCTTGgtagggtttttgttttgatctatttataaagaatattagttcttggtattctgtattctttccttagtagatgatgtagatcatttgctttcttttatggtgttacag
|| || || |  ||||||||  | ||||||||| | ||  || ||   |||||||||||||||||||| |||||||| || || ||  | |||||  | ||||   ||  |||| |   || | | |   |  |  |  | |   ||| |     |  |||      |  ||  | || |       ||| |   |||  ||| |   
GAATTACCGAGCAAAGCAAAAATTTTCTTCAGTGCTGCAGTTGAAGCCTGGGATGCAGAATTTTATGTCAAAGTTGAAGATAACATTAATCTTGACTTAGgtatttttcctgttct---ctctctgt---gtgtgctgatacacagtacttctattgattttgccccttcat--tttaaactgaccccttgcaagtattctgtcag--

upper sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G32120.1 (Arabidopsis thaliana), 5'ss of exon 7
GAGTTGCCTAAGAAAGCAAAGTTGTTCTTCAGTACAGCGCTTCAAAATTGGGATGCAGAATTTTATGTGAAAGTTGATGACAAGATAGACCTTGATCTTGgtagggtttttgttttgatctatttataaagaatattagttcttggtattctgtattctttccttagtagatgatgtagatcatttgctttcttttatggtgttacag
||||| || |||||||  ||||| |||| |||| | ||  |||| |||||||| ||||| |||||||| ||||||||||||||  | ||| | |||||||||||   ||    ||| |||| ||| |   | | |    |  ||| |    |  |   | ||        | |||||   | | |  |     |||  ||| | ||||
GAGTTACCGAAGAAAGTGAAGTTCTTCTACAGTGCTGCTGTTCAGAATTGGGACGCAGAGTTTTATGTCAAAGTTGATGACAACGTTGACTTGGATCTTGgtagtacttcctctttcatctctttgtcttgcaaagctatgtttgatccaat-cagggtatc-------aacgatgtctttgagtaacaaatgttttcggtctaacag

upper sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT2G25300.1 (Arabidopsis thaliana), 5'ss of exon 7
GAGTTGCCTAAGAAAGCAAAGTTGTTCTTCAGTACAGCGCTTCAAAATTGGGATGCAGAATTTTATGTGAAAGTTGATGACAAGATAGACCTTGATCTTGgtaggg--tttttgttttgatctatttataaagaatattagttcttggtattctgtatt--ctttccttagtagatgatgtagatcatttgctttcttttatggtgttacag-------------------
||| |  | |||||||  ||||| ||||| ||| | ||  ||||||| ||||||||||| |||||  | |||||||||||||| || ||| | ||||||||||  |  ||  | ||||  |   | | |  | | |  |  ||  |  ||  ||| ||   |  |   |  || || || | |        ||  | |      |  ||                      
GAGCTAGCCAAGAAAGTGAAGTTCTTCTTTAGTGCTGCTGTTCAAAACTGGGATGCAGAGTTTTACATCAAAGTTGATGACAATATTGACTTAGATCTTGgtaaagacttcctcttttatttcctatctgtaaagttatgtttggtcctaccctgcatcagcaatttatgttaaattatcttgggttcaatctcacatcaccaattctatttgtgtgattcaaactgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351029617|gb|FQ427457.1|FQ427457
EST:     GGATGCAGAATTTTATGTGAAAGTTGATGACGAGATATACCTTGATCTTG                         ATGGTTTAATTAGTCTTCTTGAAAGCCGCCGTGGTCAAGATAGCGCTTATA
genomic: GGATGCAGAATTTTATGTGAAAGTTGATGACAAGATAGACCTTGATCTTGgtagggtttt ... ggtgttacagATGGTTTAATTAGTCTTCTTGAAAGCCGCCGTGGTCAAGATAGCGCTTATA