1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCTATACTAAACTTGAGGAAAAGACTCATGCAAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAGgttgtactattttatgcctagttccataatgcaattgtggagactctaatttgttagtaaagtttgttctttttctgacaagttcttctattgttttacag
species | Vitis vinifera |
transcript | Vv04s0008g05480.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAAATAGAGCGGACTAGCTTGCAAGCTAAGTCCAAG GAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAAEST: gi|110711956|gb|EE089029.1|EE089029
genomic: GAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAGgttgtactat ... tgttttacagGAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAA
EST: AGACTCATGCNAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAG GAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAAEST: gi|110732118|gb|EE107126.1|EE107126
genomic: AGACTCATGCAAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAGgttgtactat ... tgttttacagGAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAA
EST: AGACTCATGCAAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAG GAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAAEST: gi|37183656|gb|CF603010.1|CF603010
genomic: AGACTCATGCAAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAGgttgtactat ... tgttttacagGAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAA
EST: AGACTCATGCAAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAG GAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAAEST: gi|110372845|gb|EC937039.1|EC937039
genomic: AGACTCATGCAAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAGgttgtactat ... tgttttacagGAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAA
EST: AGACTCATGCAAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAG GAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAAEST: gi|110713754|gb|EE089952.1|EE089952
genomic: AGACTCATGCAAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAGgttgtactat ... tgttttacagGAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAA
EST: AGACTCATGCAAAGGAAATAGAGCGGACTGACTTGCAAGCTAAGTCCAAG GAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAGGAGTTTGACCTTTTAAEST: gi|34547260|gb|CF515492.1|CF515492
genomic: AGACTCATGCAAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAGgttgtactat ... tgttttacagGAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTT-AA
EST: GACTCATGCAAAGGAAATAGAGCGGACTAGCTTGCAAGCTAAGTCCAAG GAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAAEST: gi|294964234|gb|GW838037.1|GW838037
genomic: GACTCATGCAAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAGgttgtactat ... tgttttacagGAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAA
EST: GACTCATGGCAA-GGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAG GAAACTCAAGAAGCTGA
genomic: GACTCATG-CAAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAGgttgtactat ... tgttttacagGAAACTCAAGAAGCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTATACTAAACTTGAGGAAAAGACTCATGCAAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAGgttgtactattttatgcctagttccataatgcaattgtggagactctaatttgttagtaaagtttgttctttttctgacaagttcttctattgttttacag
- - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT