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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATGATGGACCTGGCCTTCTGTCTATGTCAGTTGCCGATCGGGACACTGTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttatttactagattgttacagcatttggttttcttcaatggatgtttgtcagattgttctcaatttggttttatttgtttggtacatgaagaaattctcatctgcatgaaactgttcatttttgaaatcatttaaacag

Basic information

species Vitis vinifera
transcript Vv04s0008g05090.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g05090.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G07300.1 (Glycine max), 5'ss of exon 7
AGCATGATGGACCTGGCCTTCTGTCTATGTCAGTTGCCGATCGGGACACTGTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttatttactagattgtta-cagcatttggttttcttcaatggatgtttgtcagattgttctcaatttggttttatttgtttggtacatgaagaaattctcatctgcatga--aactgttcatttttgaaatcatttaaacag
|||||||||   | || ||| | || ||| || |||| || || |||||  |||||||||| |||||| |||| || |  ||| |||||||||||||||||||||| ||| |  |  ||||||  ||||||||   ||  | || ||||||||        | || | | ||| | ||     | |||| |    | | ||| |    ||| |     |  ||  ||||||  |              
AGCATGATGCTACCGGACTTTTATCAATGGCAATTGCAGACCGTGACACACTTGGTTCTCATTTTATTATCACTTTGAAAGCTGATCATCATCTTGATAGgtttgtgtatctggttaattgttggcagcattttacttcttaca-tggatgttc-------tattttgatttttgattgtgggggttggca----aggtaatgcctgactgtacagttatgtggccattttgcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687168|gb|EE064342.1|EE064342
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
EST: gi|34544006|gb|CF512238.1|CF512238
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
EST: gi|30295674|gb|CB972468.1|CB972468
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTG
EST: gi|352777331|gb|FQ473965.1|FQ473965
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
EST: gi|34543917|gb|CF512149.1|CF512149
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
EST: gi|34550009|gb|CF518241.1|CF518241
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAGGAG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
EST: gi|34550884|gb|CF519098.1|CF519098
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAGGAG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
EST: gi|352765311|gb|FQ466008.1|FQ466008
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAAGTATTTGCAAAGCTTGTACAAGGACCTGAAGTTTTGAAGA
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTA-GTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGA
EST: gi|26262030|gb|CA813093.1|CA813093
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGT
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGT
EST: gi|352772302|gb|FQ469827.1|FQ469827
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAGGTATGGAGTATTTTGGAAAGCTTGTACAAGGACATGAAGTATTGAAGA
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTT-GGAAAGCTTGTACAAGGACATGAAGTTTTGAAGA
EST: gi|110723917|gb|EE099287.1|EE099287
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG